Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9420 342 6e-89 seq19734 114 2e-20 seq37045 111 2e-19 seq43468 107 2e-18 seq3440 100 4e-16 seq38390 86.0 8e-12 >seq9420 Length=356144 Score = 342 bits (378), Expect = 6e-89 Identities = 644/939 (69%), Gaps = 26/939 (3%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 33291 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || | || | || || || || || || |||| | ||| ||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 |||| || ||||| || || || || ||| || | || |||| ||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 ||| ||||| || || || || ||| ||||| | |||||||| || || | | Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAA 33531 | || || | ||| |||| || ||||| ||||| || || ||||| | || || Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839 Query 33532 ATCTAACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 ||| || | | || || | | | | |||| | ||||| ||||||| || || ||| Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 || ||||| | |||||| ||||| ||||| | ||| || ||||| ||||| || ||||| Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 || || || || || ||||| ||||| || || || | || ||||||| | ||||| Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 53015 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33767 ||||||||||| | | || | || ||||| | | | |||| ||||| | Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 |||||||| |||||||| || ||||||||||||||||| ||||||| | |||| | Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | |||| || |||||| | ||||| || || | | |||||||||||| ||||| Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || ||||| || || || || ||||||| | || || || ||||| |||||| Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255 Query 33948 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCC 34007 | |||||| || | || |||||||| ||||| |||||||| |||||||| || || Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315 Query 34008 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----AT 34063 | ||||| |||||||| | | || | ||| || ||||| || || || Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCC---CAGTGCCAAAT 53371 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || || || | ||||| || || | ||||| || || || || ||||| |||||||| Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||| ||||| || | | | ||||| || ||||| Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq19734 Length=6466590 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| ||||||||||||||||||||||| | || |||||||| | | Sbjct 5924698 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 5924639 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 5924638 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 5924579 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 || |||| ||| || || | ||||||| || Sbjct 5924578 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 5924546 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 5935721 CTGTTTCTTATACCATA 5935705 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || | ||||| | Sbjct 5930555 CATAGGTTTCATATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCACCAT 5930496 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| |||||| || ||| ||||| | || ||||| || | Sbjct 5930495 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 5930436 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 5930435 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 5930376 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 5930375 GTTTATTTGA 5930366 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566 || |||| ||| | || |||||| ||| | | | ||| ||||| || || |||| Sbjct 5921113 ATGTAGCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCAGATTTA 5921054 Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626 || || ||||| || | |||| |||||||| |||||||| ||||| ||||| |||| Sbjct 5921053 GAAATCAATGCACACTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCTTTCATA 5920994 Query 63627 TTAAGTAGAAAACAGCTA 63644 | || |||||||||||| Sbjct 5920993 CTCAGAAGAAAACAGCTA 5920976 >seq37045 Length=3135053 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| || ||||| || || || || | Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341 Query 33724 C 33724 | Sbjct 1579342 C 1579342 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 >seq43468 Length=1795776 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1441964 >seq3440 Length=2001206 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| |||||||||||| |||||||||| ||||||| || | Sbjct 1336921 TCGGATCTCTGGGTTTGATTTTTGCATTGACTTTAAACAGACATAAGTATCCCCTTAACC 1336980 Query 188436 TGTACCTACTTTGTGGATTT 188455 |||||||||||| ||||||| Sbjct 1336981 TGTACCTACTTTTTGGATTT 1337000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||||||||| |||||||| |||| ||| Sbjct 1343241 GTTACTTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTT 1343300 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 ||| | ||||| | |||||||||||| ||||| |||||||| ||| ||| Sbjct 1343301 TTTGGTTTGACTGTGTATACTCTACAATCTAAGAGGGATTTCAGCAAATTTG 1343352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||||||||||||||||| |||| ||||| || |||||||||||| Sbjct 1320437 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCAGCGTGCAC 1320496 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 1320497 ATCCGAATGG 1320506 >seq38390 Length=1205360 Score = 86.0 bits (94), Expect = 8e-12 Identities = 176/258 (68%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | | ||| ||| | || ||| |||||| Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTT--CGGTATCATCCAAAGCTTGAACTTCT 764357 Query 31357 TCAAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATT 31415 || | |||||||||| | | | |||| | || ||||| || ||| ||| || | || Sbjct 764358 TCTATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTT 764417 Query 31416 TACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 31475 || | |||| | ||| ||| |||| || | | || | ||||| |||||||| Sbjct 764418 GACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATC 764477 Query 31476 TTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGG 31532 ||| |||| ||||| |||||| |||||| | |||| | || || |||| || Sbjct 764478 TTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGG 764537 Query 31533 AGCTATTCTACCATAGCA 31550 ||||| ||| ||||| || Sbjct 764538 AGCTACTCTTCCATAACA 764555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628750751967360