Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9420 250 2e-61 seq30183 150 2e-31 seq43468 114 1e-20 seq19734 93.3 4e-14 >seq9420 Length=356144 Score = 250 bits (276), Expect = 2e-61 Identities = 616/915 (67%), Gaps = 31/915 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| || || |||| || | || | Sbjct 52575 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCCCTTACTC-TCTTCTCAA 52633 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| | ||||| |||| |||||||||| ||| || || | ||| Sbjct 52634 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 52688 Query 11427 TGAAGACTTTT-TCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485 |||| || || ||| |||| | || | ||| ||||| || || || || || Sbjct 52689 TGAAAACCTTGCTCA-AACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTAT 52745 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || ||||| | |||||||| || ||| | | ||| || | || | || | || Sbjct 52746 TGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAAT 52805 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGG 11604 |||| |||||| ||| |||| || ||||| ||| | || | || |||| Sbjct 52806 TCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTCTACTCCAG-TGGTTT 52864 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| || Sbjct 52865 GTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 52924 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| |||||||| | || ||||||| ||||||||| || | ||| ||||| Sbjct 52925 AATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 52984 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| ||||||||||| || || ||| | || ||||| |||| || | ||| Sbjct 52985 CGATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTC 53041 Query 11785 TCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| | ||||||||| || ||||| || || Sbjct 53042 ACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGAC 53101 Query 11842 GCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| | || || | | |||| | ||||| | |||| ||| Sbjct 53102 ACAAGGCATCGTTTCAGTGGCATTGAGGAGAAATTC--CCTTTCTTTGGGATCTTTTATG 53159 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | |||||||||||||| ||||| || || || || || ||||| || Sbjct 53160 TAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAG 53219 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||| ||||||| || || |||| ||| || || ||||| ||| | || || Sbjct 53220 CCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTT 53279 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| || |||||||| | |||||| || | || | ||| |||||| || | Sbjct 53280 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAA--ATCTC 53337 Query 12080 TCGTCTTTAG-TTAATTTA-TCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCTTC 12135 || ||| | || | | ||||| | | ||| || || || | || || || || Sbjct 53338 TCTCCTTGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTC 53395 Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195 ||||||| || || | | | |||||||| | |||||||||||| |||| | Sbjct 53396 GGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGGT 53455 Query 12196 AGGGAAAATAACGAA 12210 ||||| || || || Sbjct 53456 GGGGAAGATGACAAA 53470 >seq30183 Length=85853 Score = 150 bits (166), Expect = 2e-31 Identities = 316/463 (68%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || |||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| ||||||||| || | ||| ||||| ||||| |||||||||||| | Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | | ||||| | || ||||| || || || ||||||||| || || Sbjct 31623 ---ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 31678 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | | ||| Sbjct 31679 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGATTAT 31734 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| | ||||| |||| |||| || |||||||| || | |||| Sbjct 31735 TTATGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTG 31794 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | || || |||| ||| || ||||||| | Sbjct 31795 TAATCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 31854 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 31855 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 31897 >seq43468 Length=1795776 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1441964 CCACCACTCTTTCCCC 1441949 >seq19734 Length=6466590 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 5935721 CTGTTTCTTATACCAT 5935706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467731165841280