Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 250 2e-61
seq30183 150 2e-31
seq43468 114 1e-20
seq19734 93.3 4e-14
>seq9420
Length=356144
Score = 250 bits (276), Expect = 2e-61
Identities = 616/915 (67%), Gaps = 31/915 (3%)
Strand=Plus/Plus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | | ||| | ||| |||||| | ||||| || || |||| || | || |
Sbjct 52575 ATTCTCTGTTGGACTTGACACCACTCCCATCCTCTGATACTCCCTTACTC-TCTTCTCAA 52633
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || || ||||| | ||||| |||| |||||||||| ||| || || | |||
Sbjct 52634 AGAAGTTCGTCTTTC-----AGTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTC 52688
Query 11427 TGAAGACTTTT-TCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485
|||| || || ||| |||| | || | ||| ||||| || || || || ||
Sbjct 52689 TGAAAACCTTGCTCA-AACCCAGTTCCAGCATG--TCTGTCTGCCACAAACTCAATGTAT 52745
Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545
|| ||||| | |||||||| || ||| | | ||| || | || | || | ||
Sbjct 52746 TGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAAT 52805
Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGG 11604
|||| |||||| ||| |||| || ||||| ||| | || | || ||||
Sbjct 52806 TCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTTACTCTCTACTCCAG-TGGTTT 52864
Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664
|||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| ||
Sbjct 52865 GTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 52924
Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724
|| |||||||| |||||||| | || ||||||| ||||||||| || | ||| |||||
Sbjct 52925 AATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 52984
Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784
| ||||| ||||||||||| || || ||| | || ||||| |||| || | |||
Sbjct 52985 CGATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTC 53041
Query 11785 TCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841
||||| || ||| ||| ||||| | ||||||||| || ||||| || ||
Sbjct 53042 ACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGAC 53101
Query 11842 GCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| ||| ||||| | || || | | |||| | ||||| | |||| |||
Sbjct 53102 ACAAGGCATCGTTTCAGTGGCATTGAGGAGAAATTC--CCTTTCTTTGGGATCTTTTATG 53159
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || || | |||||||||||||| ||||| || || || || || ||||| ||
Sbjct 53160 TAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAG 53219
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019
||| ||||||| || || |||| ||| || || ||||| ||| | || ||
Sbjct 53220 CCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTT 53279
Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079
|||||||| || |||||||| | |||||| || | || | ||| |||||| || |
Sbjct 53280 TCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAA--ATCTC 53337
Query 12080 TCGTCTTTAG-TTAATTTA-TCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCTTC 12135
|| ||| | || | | ||||| | | ||| || || || | || || || ||
Sbjct 53338 TCTCCTTGGGCTTCAGGGATTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTC 53395
Query 12136 AACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAAT 12195
||||||| || || | | | |||||||| | |||||||||||| |||| |
Sbjct 53396 GGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGGT 53455
Query 12196 AGGGAAAATAACGAA 12210
||||| || || ||
Sbjct 53456 GGGGAAGATGACAAA 53470
>seq30183
Length=85853
Score = 150 bits (166), Expect = 2e-31
Identities = 316/463 (68%), Gaps = 16/463 (3%)
Strand=Plus/Plus
Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689
|| |||| | ||| |||||||| || || || || || |||||||| |||||||| |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749
|| ||||||| ||||||||| || | ||| ||||| ||||| |||||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803
| | ||||| ||||| ||| | || | |||||||| || | ||||| | |
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622
Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863
||||| | | ||||| | || ||||| || || || ||||||||| || ||
Sbjct 31623 ---ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 31678
Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921
|| | | |||| | ||||| | |||||| ||| || ||| || || | | | |||
Sbjct 31679 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGATTAT 31734
Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
|| || ||||| | ||||| |||| |||| || |||||||| || | ||||
Sbjct 31735 TTATGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTG 31794
Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041
| ||| | || | |||| |||| | || || |||| ||| || ||||||| |
Sbjct 31795 TAATCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATG 31854
Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
|||||| || || || |||| |||||| ||| |||| ||
Sbjct 31855 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 31897
>seq43468
Length=1795776
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 1441964 CCACCACTCTTTCCCC 1441949
>seq19734
Length=6466590
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||||
Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || || |||||||| || || || || |
Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 5935721 CTGTTTCTTATACCAT 5935706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467731165841280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |