Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 138 1e-27
seq44127 105 6e-18
seq23601 105 6e-18
seq6252 82.4 7e-11
>seq43609
Length=3422226
Score = 138 bits (152), Expect = 1e-27
Identities = 129/164 (79%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || |
Sbjct 1891085 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 1891026
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 1891025 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 1890966
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
|||| || ||||| || | | || || ||||| || ||||||
Sbjct 1890965 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 1890922
>seq44127
Length=2713167
Score = 105 bits (116), Expect = 6e-18
Identities = 192/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || |||| || ||||| || ||||| || || ||||| | |
Sbjct 202071 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 202130
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
|||||||| | || | ||||||||| | | | ||| || ||||| ||||| |||||
Sbjct 202131 TCTCTGCTGAGAACTAAATTAATTCTATCCTTGAAAGGTCGATTCTTCTCAGGAATGGAG 202190
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| || | |||||||| |||| ||||| || |||| | || || | | |
Sbjct 202191 AACCAGGTCTACCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTG 202250
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202
||| || |||| |||||| | | ||| || || || ||||| |||| || ||
Sbjct 202251 GTCCTTCTCTGGAAATACCTGAATTCATTCCTGAGCGGAGGCCAGGGCAGGTCCCCATTC 202310
Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243
|| ||||| || | | || || || |||||||||||
Sbjct 202311 TTGCCAATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 202351
>seq23601
Length=1137639
Score = 105 bits (116), Expect = 6e-18
Identities = 130/177 (73%), Gaps = 8/177 (5%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
|||||| | || | ||||| || || |||||||| || || | || |||||| |||
Sbjct 136938 GTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTG 136879
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
||||||| ||| || || |||||||||||||||||||| || || | || ||||||
Sbjct 136878 CGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAA-GGTGCACCCAGGCCC-- 136822
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTG 21121
| ||||| || | |||||||||||||||||| || ||||| | |||||
Sbjct 136821 -----CTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 136770
>seq6252
Length=276759
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
|||||||| | || | ||||||||||||| | |||||| || || ||||| | |||
Sbjct 184477 TCTCTGCTGAGAACTACATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 184418
Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141
||||| | |||| | |||||||| |||| ||||| || |||| | | || | || |
Sbjct 184417 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 184359
Query 3142 CGTCATTTTCTGAAAATAC 3160
|||||| |||| ||||||
Sbjct 184358 GGTCATTCTCTGGAAATAC 184340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427069505477760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |