Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq43609 138 1e-27 seq44127 105 6e-18 seq23601 105 6e-18 seq6252 82.4 7e-11 >seq43609 Length=3422226 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 1891085 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 1891026 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 1891025 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 1890966 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 1890965 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 1890922 >seq44127 Length=2713167 Score = 105 bits (116), Expect = 6e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | Sbjct 202071 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 202130 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 202131 TCTCTGCTGAGAACTAAATTAATTCTATCCTTGAAAGGTCGATTCTTCTCAGGAATGGAG 202190 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | |||||||| |||| ||||| || |||| | || || | | | Sbjct 202191 AACCAGGTCTACCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAAGGTGTG 202250 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 ||| || |||| |||||| | | ||| || || || ||||| |||| || || Sbjct 202251 GTCCTTCTCTGGAAATACCTGAATTCATTCCTGAGCGGAGGCCAGGGCAGGTCCCCATTC 202310 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || ||||| || | | || || || ||||||||||| Sbjct 202311 TTGCCAATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 202351 >seq23601 Length=1137639 Score = 105 bits (116), Expect = 6e-18 Identities = 130/177 (73%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 |||||| | || | ||||| || || |||||||| || || | || |||||| ||| Sbjct 136938 GTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGATGTG 136879 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 ||||||| ||| || || |||||||||||||||||||| || || | || |||||| Sbjct 136878 CGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAA-GGTGCACCCAGGCCC-- 136822 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTG 21121 | ||||| || | |||||||||||||||||| || ||||| | ||||| Sbjct 136821 -----CTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACTG 136770 >seq6252 Length=276759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||||||| | |||||| || || ||||| | ||| Sbjct 184477 TCTCTGCTGAGAACTACATTAATTCTGTTCTTTAAAGGGCGATTTTTCTCAGGAAGGGAG 184418 Query 3083 AACCATGTTCTT-TTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| | |||| | |||||||| |||| ||||| || |||| | | || | || | Sbjct 184417 AACCA-GATCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTGCTGAAGAGGTTGT 184359 Query 3142 CGTCATTTTCTGAAAATAC 3160 |||||| |||| |||||| Sbjct 184358 GGTCATTCTCTGGAAATAC 184340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427069505477760