Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq9420 109 4e-19 seq30183 84.2 2e-11 >seq9420 Length=356144 Score = 109 bits (120), Expect = 4e-19 Identities = 390/595 (66%), Gaps = 40/595 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || ||||||| ||||||||||| || | || Sbjct 53431 ATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGAC 53372 Query 22405 GTACGCCATTGGACAGAAAAACTGA--CCGAGGCTGAGCGCAGGTTCATGTCTCACATAC 22462 | | || ||| ||| |||| || | | ||| | || || || || | | Sbjct 53371 ATTTGGCACTGG---GAATCCCTGAAGCCCAAGGAGAGAGAT--TTTATATCCCATGTTC 53317 Query 22463 TGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTC 22518 ||| ||||||||| ||| |||||||| ||| || ||| | ||| || |||| Sbjct 53316 TGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTA 53260 Query 22519 GCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATG 22578 || || ||| || | || |||||||| | ||||| ||| || || | || || Sbjct 53259 GCCAA-GAAGTTCAG---ATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATA 53204 Query 22579 GAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG--- 22635 || || |||||| |||||||||||| | || ||| ||| | || ||||| Sbjct 53203 GAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATA---AAAGATCCC 53147 Query 22636 -AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCA 22692 || ||| || | ||| || ||||| ||||| ||||| || |||||| Sbjct 53146 AAAGAAAGGGAATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCA 53087 Query 22693 CAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTCT 22747 | ||||| ||||| ||| | | ||| | ||| |||| | | |||| | Sbjct 53086 GATTGGGCCTTGCAC--TGGATTGGGG--ACAAAGAAGCTACCTATGGTGA-ACGTGTTG 53032 Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 | | |||||| || | |||||| || |||||||| | ||||| | |||||||||| Sbjct 53031 TAGTCTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGC 52975 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||| || | |||||| | || | Sbjct 52974 TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATG 52915 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 52914 AGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACC 52860 >seq30183 Length=85853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836 |||||||| || ||||| ||||||||||| |||||||| || ||||| || | Sbjct 31558 TTTTCTGGTTCTTTTGCACTGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTC 31499 Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | |||||||| || | |||||| |||| || ||| |||||||| || ||||||| Sbjct 31498 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACGTTGCTTG 31443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355645261507336