Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 109 4e-19
seq30183 84.2 2e-11
>seq9420
Length=356144
Score = 109 bits (120), Expect = 4e-19
Identities = 390/595 (66%), Gaps = 40/595 (7%)
Strand=Plus/Minus
Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404
||||| |||||||| | || || || ||||||| ||||||||||| || | ||
Sbjct 53431 ATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGAC 53372
Query 22405 GTACGCCATTGGACAGAAAAACTGA--CCGAGGCTGAGCGCAGGTTCATGTCTCACATAC 22462
| | || ||| ||| |||| || | | ||| | || || || || | |
Sbjct 53371 ATTTGGCACTGG---GAATCCCTGAAGCCCAAGGAGAGAGAT--TTTATATCCCATGTTC 53317
Query 22463 TGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTC 22518
||| ||||||||| ||| |||||||| ||| || ||| | ||| || ||||
Sbjct 53316 TGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTA 53260
Query 22519 GCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATG 22578
|| || ||| || | || |||||||| | ||||| ||| || || | || ||
Sbjct 53259 GCCAA-GAAGTTCAG---ATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATA 53204
Query 22579 GAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG--- 22635
|| || |||||| |||||||||||| | || ||| ||| | || |||||
Sbjct 53203 GAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATA---AAAGATCCC 53147
Query 22636 -AATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCA 22692
|| ||| || | ||| || ||||| ||||| ||||| || ||||||
Sbjct 53146 AAAGAAAGGGAATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCA 53087
Query 22693 CAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTCT 22747
| ||||| ||||| ||| | | ||| | ||| |||| | | |||| |
Sbjct 53086 GATTGGGCCTTGCAC--TGGATTGGGG--ACAAAGAAGCTACCTATGGTGA-ACGTGTTG 53032
Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807
| | |||||| || | |||||| || |||||||| | ||||| | ||||||||||
Sbjct 53031 TAGTCTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGC 52975
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
| |||||||| || ||||| || | | |||||||| || | |||||| | || |
Sbjct 52974 TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATG 52915
Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922
| ||| |||||||||| |||||||| || |||| | || ||| | |||||||
Sbjct 52914 AGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTGGTACACAAACC 52860
>seq30183
Length=85853
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836
|||||||| || ||||| ||||||||||| |||||||| || ||||| || |
Sbjct 31558 TTTTCTGGTTCTTTTGCACTGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTC 31499
Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892
| |||||||| || | |||||| |||| || ||| |||||||| || |||||||
Sbjct 31498 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACGTTGCTTG 31443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355645261507336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |