Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq42152 104 2e-17 seq69637 93.3 4e-14 seq36884 91.5 1e-13 seq40450 82.4 8e-11 >seq42152 Length=979470 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 315742 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315801 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 315802 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315861 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || |||||| || | | ||| | ||||| ||||||||||| Sbjct 315862 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315921 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||||| || || ||||| || ||||| Sbjct 315922 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315968 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 315514 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315573 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 315574 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315633 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || |||||| || | | ||| | ||||| ||||||||||| Sbjct 315634 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315693 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 315694 TCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 315741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 315358 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 315417 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 315418 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 315477 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 315478 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 315513 >seq69637 Length=240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||| || |||||||||| ||||| || || || || ||||||||| Sbjct 224 TCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATTCCTTCTTTG 165 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | ||| | |||||| | || || ||||||| || | Sbjct 164 TCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGGTTCGACCTCAAGTGTGATG 105 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || |||| || || || || ||||||||| Sbjct 104 GTCTTACCAGTCAGGGTCTTGACAAAGATTTGCATA 69 >seq36884 Length=899181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || || |||| ||||||||||||||||| || || || || || | || | | Sbjct 628426 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-T 628484 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | |||||| | ||||| || ||||| || Sbjct 628485 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAA 628544 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || | || | ||| | |||||| | ||| || ||||| | ||| | | Sbjct 628545 CCTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAACCTCGAGGGTGATGG 628604 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | ||| | ||||| || ||||| Sbjct 628605 TCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 628638 >seq40450 Length=975263 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||| ||| ||||||||||| | || || || | || | ||||| || || Sbjct 15914 TGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCA-TCTTCCAGTTG 15972 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 | |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 15973 CTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 16032 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | || || | ||| || ||||||| ||| | ||||| || | Sbjct 16033 GGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCCT 16092 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || || ||||| Sbjct 16093 TAGGGTTTTCACAAAAATCTGCAT 16116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495223717190400