Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9420 347 2e-90 seq37045 120 4e-22 seq19734 120 4e-22 seq43468 111 2e-19 seq38390 91.5 2e-13 >seq9420 Length=356144 Score = 347 bits (384), Expect = 2e-90 Identities = 645/939 (69%), Gaps = 26/939 (3%) Strand=Plus/Plus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669 |||| |||||| |||| | | |||| ||| ||| | || |||| |||||||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 | || || || | || | || || || || || || |||| | ||| ||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 |||| || ||||| || || || | ||| || | || |||| ||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 ||| || || ||||| || || ||| ||||| | |||||||| || ||| | | Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 | || || | ||| |||| || ||||| ||||| || || |||| | || || Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839 Query 49910 ATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 ||| || | | || || | | | | || | | ||||| ||||||| || || ||| Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || ||||| | |||||| ||||| ||||| ||||| |||||||| ||||| || ||||| Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088 || || || || || ||||| ||||| || ||||| | |||||||||| | ||||| Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 53015 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTT 50145 |||| |||||| | |||| | || ||||| | || |||| ||||| | Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 |||||||| |||||||| || ||||||||||||||||| ||||||| | |||| | Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | |||| || |||||| | ||||| || || | | |||||||||||| ||||| Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || ||||| || || || || ||||||| | || || || ||||| |||||| Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | |||||| || | || |||||||| ||||| || ||||| |||||||| || || Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----AT 50441 | ||||| |||||||| | | || ||||| | || ||||| || || || Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAG-GGATTCC---CAGTGCCAAAT 53371 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 || || || | || || || || | ||||| || || || || ||||| |||||||| Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | |||||| ||||| || | | | ||||| || ||||| Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq37045 Length=3135053 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341 Query 50102 CAACAA 50107 | |||| Sbjct 1579342 CTACAA 1579347 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 >seq19734 Length=6466590 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||||| Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||||||||||||||| | || |||||||||| | ||| Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 5924574 TCCAGGTAAATAGC 5924561 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 5935721 CTGTTTCTTATACCATA 5935705 >seq43468 Length=1795776 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 1441962 ACCACTCTTTCCCC 1441949 >seq38390 Length=1205360 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || ||| ||| | || ||| ||||| || Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTATCATCCAAAGCTTGAACTTCTTC 764359 Query 47763 CAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 47821 | |||||||||| | | | |||| | || ||||| || ||| ||| ||| | || | Sbjct 764360 TATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGA 764419 Query 47822 CATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 47881 | | ||| | ||| ||| |||| || | | || | ||||| |||||||||| Sbjct 764420 CTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATCTT 764479 Query 47882 CGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAG 47938 | |||| |||||| |||||| |||||| | |||| | || || |||| |||| Sbjct 764480 CACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAG 764539 Query 47939 CTATTCTACCATAGCA 47954 ||| ||| ||||| || Sbjct 764540 CTACTCTTCCATAACA 764555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717052124479680