Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 347 2e-90
seq37045 120 4e-22
seq19734 120 4e-22
seq43468 111 2e-19
seq38390 91.5 2e-13
>seq9420
Length=356144
Score = 347 bits (384), Expect = 2e-90
Identities = 645/939 (69%), Gaps = 26/939 (3%)
Strand=Plus/Plus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 49669
|||| |||||| |||| | | |||| ||| ||| | || |||| ||||||||
Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
| || || || | || | || || || || || || |||| | ||| ||||| |
Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661
Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789
|||| || ||||| || || || | ||| || | || |||| ||| ||
Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720
Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849
||| || || ||||| || || ||| ||||| | |||||||| || ||| | |
Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779
Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909
| || || | ||| |||| || ||||| ||||| || || |||| | || ||
Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839
Query 49910 ATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968
||| || | | || || | | | | || | | ||||| ||||||| || || |||
Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898
Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028
|| ||||| | |||||| ||||| ||||| ||||| |||||||| ||||| || |||||
Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958
Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088
|| || || || || ||||| ||||| || ||||| | |||||||||| | |||||
Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 53015
Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTT 50145
|||| |||||| | |||| | || ||||| | || |||| ||||| |
Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075
Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205
|||||||| |||||||| || ||||||||||||||||| ||||||| | |||| |
Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135
Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265
| |||| || |||||| | ||||| || || | | |||||||||||| |||||
Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195
Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
||||| || ||||| || || || || ||||||| | || || || ||||| ||||||
Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255
Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385
| |||||| || | || |||||||| ||||| || ||||| |||||||| || ||
Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315
Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----AT 50441
| ||||| |||||||| | | || ||||| | || ||||| || || ||
Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAG-GGATTCC---CAGTGCCAAAT 53371
Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501
|| || || | || || || || | ||||| || || || || ||||| ||||||||
Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431
Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540
| |||||| ||||| || | | | ||||| || |||||
Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq37045
Length=3135053
Score = 120 bits (132), Expect = 4e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 50102 CAACAA 50107
| ||||
Sbjct 1579342 CTACAA 1579347
Score = 100 bits (110), Expect = 4e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||| | ||||| || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| || || || |||||||| | || || |||||||| |||||| | |||||| ||
Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446
>seq19734
Length=6466590
Score = 120 bits (132), Expect = 4e-22
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| |||||||| || |||||| ||| | || || || || |||||||
Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| |||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||| ||||| ||||||||||||||||||||||| | || |||||||||| | |||
Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 5924574 TCCAGGTAAATAGC 5924561
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||| |||| || |||||||| || || || ||||| || || | | ||||
Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 5935721 CTGTTTCTTATACCATA 5935705
>seq43468
Length=1795776
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963
Query 50104 ACAAGTCTCTCTCC 50117
|| | ||| || ||
Sbjct 1441962 ACCACTCTTTCCCC 1441949
>seq38390
Length=1205360
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/256 (68%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || ||| ||| | || ||| ||||| ||
Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTATCATCCAAAGCTTGAACTTCTTC 764359
Query 47763 CAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 47821
| |||||||||| | | | |||| | || ||||| || ||| ||| ||| | || |
Sbjct 764360 TATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGA 764419
Query 47822 CATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 47881
| | ||| | ||| ||| |||| || | | || | ||||| ||||||||||
Sbjct 764420 CTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATCTT 764479
Query 47882 CGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAG 47938
| |||| |||||| |||||| |||||| | |||| | || || |||| ||||
Sbjct 764480 CACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAG 764539
Query 47939 CTATTCTACCATAGCA 47954
||| ||| ||||| ||
Sbjct 764540 CTACTCTTCCATAACA 764555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717052124479680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |