Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 279 5e-70
seq30183 150 2e-31
seq37045 120 3e-22
>seq9420
Length=356144
Score = 279 bits (308), Expect = 5e-70
Identities = 506/731 (69%), Gaps = 22/731 (3%)
Strand=Plus/Plus
Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631
|| ||||| | ||||| || || ||||| || ||||||||||| || ||| ||||
Sbjct 52597 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 52651
Query 13632 GATATATTTTCCATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAG 13690
|| ||||| |||||||| |||||||| || | | | ||| ||| ||| |||| ||
Sbjct 52652 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAG 52710
Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750
||| | | ||| || || | ||||||||| ||||| ||||| | ||||||||
Sbjct 52711 TTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 52768
Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810
|| || | || ||||| | | || | ||||| | |||||| ||||| |
Sbjct 52769 CCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT- 52827
Query 13811 TTTTATAATAATTG-TAATAATCTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAA 13865
| ||||| ||| | || |||| | | | | || | | || | ||||| ||
Sbjct 52828 --TGATAATTATTTCTCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAAC 52883
Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925
|| | || ||||||||||| || | ||||||||||| ||||||||||| || ||||||
Sbjct 52884 ATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAT 52943
Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985
|| | || ||||||| ||||||||| || | ||| ||||| | ||||| | || |||
Sbjct 52944 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAA 53003
Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045
|||| | || || |||||||||| ||| | ||||| ||| | | |||| ||||
Sbjct 53004 AAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTG 53060
Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105
| | ||||| | ||||| || | || || || | | || ||| |||||| |
Sbjct 53061 TCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTG 53120
Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165
||||| | | | ||||| | ||||| | | | ||||| || |||||||| || |||
Sbjct 53121 GCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTA 53180
Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225
||||||||||| |||||||| || || || || || || ||| | || || | |||||
Sbjct 53181 TACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 53240
Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285
| | || ||||| | ||||| || |||| |||||||| ||||| ||||||||
Sbjct 53241 GTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 53300
Query 14286 GCTGCAAAAAA 14296
|||||||| ||
Sbjct 53301 GCTGCAAAGAA 53311
>seq30183
Length=85853
Score = 150 bits (166), Expect = 2e-31
Identities = 297/432 (69%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931
|| |||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991
|| ||||||| ||||||||| || | ||| ||||| ||||| || || |||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051
| | || ||| ||||||||| | | ||||||| | | | |||||||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622
Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110
||||| | | || |||| | | || || || | | | |||||||||||| |||||
Sbjct 31623 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATT 31680
Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170
|| | | ||||| | ||||| || | |||| ||| |||||||| | ||| ||
Sbjct 31681 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTAT 31738
Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230
||||| ||| ||||||| |||| | || || ||||| ||||| | ||| |
Sbjct 31739 GTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAAT 31798
Query 14231 TTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289
|| | ||| ||| |||| ||| |||| ||||||| ||||| ||||||| ||||
Sbjct 31799 CTGAATTTCTTGAG-CAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 31857
Query 14290 CAAAAAATGCCA 14301
|||| || ||||
Sbjct 31858 CAAAGAAAGCCA 31869
>seq37045
Length=3135053
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||| ||
Sbjct 1579342 CTACAACACGTTCACC 1579357
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1577072 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1577130
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1577131 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1577190
Query 13643 CATAAAATCAAATGGATT 13660
|||||| |||||||| ||
Sbjct 1577191 CATAAAGTCAAATGGGTT 1577208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478915388740800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |