Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 266 3e-66
seq30183 136 4e-27
seq37045 114 1e-20
>seq9420
Length=356144
Score = 266 bits (294), Expect = 3e-66
Identities = 503/731 (69%), Gaps = 22/731 (3%)
Strand=Plus/Plus
Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419
|| ||||| | ||||| || || ||||| || ||||| ||||| || ||| ||||
Sbjct 52597 ACTCCCATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 52651
Query 13420 GATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACAACCTAG 13478
|| ||||| |||||||| || ||||| || | | | ||| ||| ||| |||| ||
Sbjct 52652 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCA-AACCCAG 52710
Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538
||| | | ||| || || | ||||||||| ||||| ||||| | ||||||||
Sbjct 52711 TTCCAGCATG--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCAT 52768
Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598
|| || | || ||||| | | ||| | ||||| | |||||| ||||| |
Sbjct 52769 CCCAATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT 52828
Query 13599 GTTTATAATAATCT-TAATAATGTC-ATTAGAAGGAGGATATTTTA---GATGTTTAAAA 13653
| ||||| || | | || | || | | | | || | | || | ||||| ||
Sbjct 52829 G---ATAATTATTTCTCTTACTCTCTACTCCA--GTGGTTTGTGTACCAGGTGTTTGAAC 52883
Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713
|| | || ||||||||||| || | ||||||||||| ||||||||||| || ||||||
Sbjct 52884 ATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAT 52943
Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773
|| | || ||||||| ||||||||| || | ||| ||||| | || || | || |||
Sbjct 52944 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAA 53003
Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833
|||| | || || |||||||||| ||| | ||||| ||| | | |||| ||||
Sbjct 53004 AAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTG 53060
Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893
| ||||| | ||||| || | || || || | | || ||| ||||| |
Sbjct 53061 TCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTG 53120
Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953
||||||| | | |||| | ||||| | | | ||||| || |||||||| || |||
Sbjct 53121 GCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTA 53180
Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013
||||||||||| |||||||| ||||| || || || || ||| | ||||| | ||||||
Sbjct 53181 TACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCT 53240
Query 14014 GACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073
| | || || || | ||||| || ||||||||||||| || || ||||||||
Sbjct 53241 GTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 53300
Query 14074 GCTGCAAAAAA 14084
|||||||| ||
Sbjct 53301 GCTGCAAAGAA 53311
>seq30183
Length=85853
Score = 136 bits (150), Expect = 4e-27
Identities = 294/432 (68%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| |||| | ||| || | |||||||| || ||||||||||| || |||||||| |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||||| ||||||||| || | ||| ||||| || || || || |||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839
| | || ||| ||||||||| | | ||||||| | | | ||||||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622
Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||| | | || |||| | | || || || | | | | |||||||| || |||||
Sbjct 31623 ATCCAATA-CAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTTCAATGGCATT 31680
Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958
||| | | |||| | ||||| || | ||||| ||| ||||||| | ||| ||
Sbjct 31681 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGATTATTTAT 31738
Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018
||||| ||| |||||||| |||| | || || ||||| || || | |||||
Sbjct 31739 GTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAAT 31798
Query 14019 TTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077
|| | || ||| ||| | || | |||||||||||| || || ||||||| ||||
Sbjct 31799 CTGAATTTCTTGAGCAAATTGTTCCA-CCAAGTTTTCATCTACTATCCCATCACATGCTG 31857
Query 14078 CAAAAAATGCCA 14089
|||| || ||||
Sbjct 31858 CAAAGAAAGCCA 31869
>seq37045
Length=3135053
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || ||||||||||| || || || ||||||||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 1579342 CTACAACACGTTCACC 1579357
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || | || | | || || || ||||| |
Sbjct 1577072 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1577130
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 1577131 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1577190
Query 13431 CATAAAATCGAATGGATT 13448
|||||| || ||||| ||
Sbjct 1577191 CATAAAGTCAAATGGGTT 1577208
Score = 82.4 bits (90), Expect = 7e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989
||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 1581334 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 1581393
Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | |||||||
Sbjct 1581394 AAGCCATAGAAACAGCGGGCTTCTG 1581418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477778118431680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |