Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 333 4e-86
seq43468 116 5e-21
seq37045 114 2e-20
seq19734 114 2e-20
seq38390 87.8 2e-12
>seq9420
Length=356144
Score = 333 bits (368), Expect = 4e-86
Identities = 642/939 (68%), Gaps = 26/939 (3%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774
|||| |||||| |||| || | |||| ||| ||| | || |||| ||||||||
Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || || || | || | || || || || || ||||||| | ||| ||||| |
Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661
Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894
|||| || ||||| || || || | ||| || | || |||| ||| ||
Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720
Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954
||| ||||| | || || || ||| ||||| | |||||||| || ||| | |
Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779
Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014
| || || | ||| |||| || ||||| ||||| || || || | | || ||
Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839
Query 42015 ATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073
||||||| | | || || | | | | | | | ||||| ||||||| || || |||
Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898
Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133
|| ||||| | |||||||||||| ||||| | ||| |||||||| ||||| || |||||
Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958
Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193
|| || || || || ||||| ||||| || ||||| | |||||||||| | |||||
Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 53015
Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 42250
|||| |||||| | | || | || ||||| | | | |||| ||||| |
Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075
Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310
|||||||| |||||||| || ||||||||||||||||| ||||||| | |||| |
Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135
Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370
| |||| || |||||| | || || || || | | |||||||||||| |||||
Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195
Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
||||| || ||||| || || || || ||||||| | ||| || || | ||| ||||||
Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255
Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490
| |||||| || | || ||||| || ||||| || ||||| |||||||| || ||
Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315
Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----AT 42546
| ||||| |||||||| | | || | || || | ||||| || || ||
Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCC---CAGTGCCAAAT 53371
Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606
|| || || | || || || || | ||||| || || ||||| ||||| ||||||||
Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431
Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| |||||||||||| || | | ||||| || |||||
Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq43468
Length=1795776
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| ||||| || ||||| ||||||||||| || ||||||||
Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1441964
>seq37045
Length=3135053
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 42207 C 42207
|
Sbjct 1579342 C 1579342
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | || || || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || |||||||| | ||| || |||| ||| |||||| | |||||| ||
Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446
Score = 87.8 bits (96), Expect = 2e-12
Identities = 118/163 (72%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 41697 AAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 41753
||||| ||||| | | ||| |||| |||||| |||| || | |||| ||| |||
Sbjct 1577046 AAATAAGGGCATATCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG 1577105
Query 41754 CTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810
| || ||||| |||||||| | || || || || || | || || || || ||||
Sbjct 1577106 TTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAG 1577165
Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||||||||||| ||| ||||| ||||| || ||||| || ||
Sbjct 1577166 TCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 1577208
>seq19734
Length=6466590
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || |||||||| || |||||| |||| |||| || || ||||| ||||
Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| || || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| ||||||||||||||||||||||| | || |||||||||| | |||
Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 5924574 TCCAGGTAAATAGC 5924561
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || |||||||| || || || ||||| || || | | || |
Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 5935721 CTGTTTCTTATACCAT 5935706
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||| || ||||| || || || | || ||||
Sbjct 5930555 CATAGGTTTCATATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCACCAT 5930496
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| || ||| ||||| | || ||||| || |
Sbjct 5930495 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 5930436
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | || ||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 5930435 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGAC 5930376
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 5930375 GTTTATTTGA 5930366
>seq38390
Length=1205360
Score = 87.8 bits (96), Expect = 2e-12
Identities = 174/256 (68%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857
|||||| || ||||| ||| | || || || ||| ||| | || ||| ||||||||
Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTATCATCCAAAGCTTGAACTTCTTC 764359
Query 39858 CAGTTCTGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 39916
| |||||||||| | | | |||| | || ||||| || ||| ||| ||| | || |
Sbjct 764360 TATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGA 764419
Query 39917 CATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976
| | || | ||| ||| |||| || | | || | ||||| ||||||||||
Sbjct 764420 CTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATCTT 764479
Query 39977 CGTCTATTACACCGCCTCCTATATCAATA---CCTTTTAGGGACAGACCAGACCTAGGAG 40033
| |||| ||||| |||||| ||||||| |||| | || || |||| ||||
Sbjct 764480 CACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAG 764539
Query 40034 CTATTCTACCATAGCA 40049
||| ||| ||||| ||
Sbjct 764540 CTACTCTTCCATAACA 764555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670002357309120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |