Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq38975 96.9 3e-15 seq33539 95.1 9e-15 seq42510 91.5 1e-13 seq39797 91.5 1e-13 seq97443 87.8 1e-12 seq69637 87.8 1e-12 seq41127 84.2 2e-11 >seq38975 Length=485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| ||||||||||| || |||| |||| || || || || ||| Sbjct 343 GTCGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTGCCGTCCTCCAACTGCTTTCCA 284 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || | ||||| |||||||||||| ||| || || || || || || || ||| Sbjct 283 GCAAAGATCAATCGTTGTTGGTCGGGTGGGATACCCTCCTTATCTTGGATCTTCGCCTTA 224 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || ||||| |||||| ||||| |||||||| || || |||| ||| Sbjct 223 ACGTTATCAATAGTATCTGATGATTCTACTTCTAATGTAATGGTCTTTCCAGTCAAAGTC 164 Query 15347 TTTACAAAAATTTGCATA 15364 || || ||||| |||||| Sbjct 163 TTGACGAAAATCTGCATA 146 >seq33539 Length=658333 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 236596 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 236655 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 236656 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 236715 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 236716 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 236775 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 236776 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 236825 >seq42510 Length=1301382 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 87125 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 87184 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 87185 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 87244 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 87245 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 87304 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 87305 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 87354 >seq39797 Length=2305578 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 1757152 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1757093 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 1757092 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1757033 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 1757032 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 1756973 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 1756972 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1756923 >seq97443 Length=343 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || || |||||||| | | | ||| | || || | || Sbjct 227 TGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCCAAAGTCCTCCCATCCTCAAGCTGC 168 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||||||||| ||||| ||| || ||||| ||||| || ||| Sbjct 167 TTCCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGTATCTTG 108 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || ||||| ||||| || || ||| Sbjct 107 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCAGTC 48 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || ||||| Sbjct 47 AAGGTCTTGACAAAGATCTGCAT 25 >seq69637 Length=240 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || || || ||| | |||| ||| || ||||| ||| |||||||||||| Sbjct 224 TCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATTCCTTCTTTG 165 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||| ||| |||| || || || | ||| || || | || ||| Sbjct 164 TCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGGTTCGACCTCAAGTGTGATG 105 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || ||||| ||||||||| Sbjct 104 GTCTTACCAGTCAGGGTCTTGACAAAGATTTGCATA 69 >seq41127 Length=7874669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||| || | || || | || |||||||| ||||| || |||||||| || Sbjct 7357800 TGCCACCTTGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 7357859 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| | ||||||||||| |||||| | | | ||||| || Sbjct 7357860 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTG 7357919 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || |||| || |||| || || | || ||||| || || || | Sbjct 7357920 GGATACCCTCCTTGTGTTGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGA 7357979 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 | || | || |||||||| ||||| || || || ||||| || ||||| |||| Sbjct 7357980 CCTCAAGGGGGATGGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTTTG 7358033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361581042036792