Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 262 3e-65
seq43468 102 7e-17
seq37045 82.4 7e-11
>seq9420
Length=356144
Score = 262 bits (290), Expect = 3e-65
Identities = 575/854 (67%), Gaps = 28/854 (3%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || || ||||| || ||||| ||||| || |||| | |||||||| |||
Sbjct 52609 TGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 52663
Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
||||| || || || || | || | || || | | |||| | ||| || |
Sbjct 52664 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC---TTGCTCAAACCC-AGTTCCAGCAT 52719
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
|||||| || |||||||| ||||| || ||||||| | || ||||| || ||
Sbjct 52720 G--TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 52777
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
|| ||||||| || || || | || | | |||||| ||| || | ||||| |||
Sbjct 52778 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 52837
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158
||||||| | | ||| | ||| | | || || || ||||||| || |||||
Sbjct 52838 TTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 52897
Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218
||||||||| || || |||||||| || || || || || |||||||| || || |||||
Sbjct 52898 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 52957
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
|| |||||||| || | ||| ||||| | ||||| |||| | |||| || |||||
Sbjct 52958 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 53014
Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337
|||| ||||| ||| |||| | ||||||||| ||| | ||| | | ||||| |
Sbjct 53015 CGCTGCAGCAAAGACTA-CAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGT 53073
Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397
|||||| | ||| || | || || || ||| |||| | || || | | |
Sbjct 53074 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAA 53133
Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457
| | |||| || ||| || ||||| || || | || ||||||||||| ||||
Sbjct 53134 ATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAT 53193
Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517
| || || || || || |||||||| ||| | ||||| | || |||| | ||||||||
Sbjct 53194 GTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTT 53253
Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577
| | ||||| || | |||||||| || ||||| || ||||| || ||||| |||
Sbjct 53254 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 53313
Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTT----TTCTGACAACTTTAACCAATCTGGA 13633
| || | || ||||| | | | || || ||| | | | ||| | |
Sbjct 53314 CCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGA----TTCCCAGTGCCAA 53369
Query 13634 AAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATAC 13693
| || || || | || |||||||| ||||||| || ||||| | ||||||||||||
Sbjct 53370 ATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 53429
Query 13694 ATCATCCATATATC 13707
||| ||| |||||
Sbjct 53430 ATCTGCCAGATATC 53443
>seq43468
Length=1795776
Score = 102 bits (112), Expect = 7e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || |||||||| || || ||||| |
Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 1441964 CCACCACTCTTTCCCC 1441949
Score = 93.3 bits (102), Expect = 4e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct 1453443 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1453384
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| ||||||||||
Sbjct 1453383 ATAAAATCAAAAGGATTTT 1453365
>seq37045
Length=3135053
Score = 82.4 bits (90), Expect = 7e-11
Identities = 79/99 (80%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
|| ||||| || || || ||| ||||||||||| ||||| || |||||||| || |||||
Sbjct 1581334 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 1581392
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||| | || |||| | |||||||||
Sbjct 1581393 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 1581431
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430270609939824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |