Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 210 2e-49
seq43468 98.7 1e-15
seq37045 87.8 2e-12
>seq9420
Length=356144
Score = 210 bits (232), Expect = 2e-49
Identities = 599/918 (65%), Gaps = 20/918 (2%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | |||||| | ||||
Sbjct 52543 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCC 52602
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || || ||||| || || || || || ||||||| | ||| |||
Sbjct 52603 ATCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 52657
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| |||||||| || || | | || | || | |||||||||| |
Sbjct 52658 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCC-AG 52716
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
|| ||| ||||| ||||| || || ||||| ||||| |||||||| || ||
Sbjct 52717 CATG-TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATA 52775
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
|| ||||| | || | || | || | |||||| || || | | ||||
Sbjct 52776 GGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATT 52835
Query 21422 ATATTTATTATCCTAGATGTACT--AGGGGGATAC--AATAATTGTTTAAACATCAAACA 21477
|| | | ||| || |||| || || | | | ||||| ||||||| ||
Sbjct 52836 ATTTCTCTTACTCTC----TACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCA 52891
Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537
||||||||||| || ||||| ||||| || || || | |||||| |||||||| | ||
Sbjct 52892 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCC 52951
Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597
||||| | ||||| || || | ||| ||||| || ||||| || |||||| ||
Sbjct 52952 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---AT 53008
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657
||| || | |||||||| | || | |||||||| || |||| |||||| ||| ||
Sbjct 53009 GCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAAT 53068
Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717
||| | ||||| | |||||| | || | |||| || || ||| | || || |
Sbjct 53069 CCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAG 53128
Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777
||| | |||| | ||| ||||| ||||||||||||
Sbjct 53129 GAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTC 53188
Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT-T 21836
||||||||| || ||||| || || || || || | ||||| | || |||| ||| |
Sbjct 53189 AGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTG-TCATCT 53247
Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896
|||| || |||||| | ||||||||||||||||||| |||||||| || ||||
Sbjct 53248 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAA 53307
Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956
| || ||| | || |||||||| || || || | | || ||| |
Sbjct 53308 AGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCC 53367
Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTAT 22016
| | || || || | || || || || | ||||| ||| ||| ||||| ||||
Sbjct 53368 AAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTAT 53427
Query 22017 ACATAATCCAGATATCAT 22034
|||| |||||||||||
Sbjct 53428 ACATCTGCCAGATATCAT 53445
>seq43468
Length=1795776
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/169 (73%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158
||||| || |||| || || | || |||||||||| ||||| || | ||| || ||||
Sbjct 1453532 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 1453473
Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218
|| ||| || ||||| | | | ||||| || ||||| ||| || || ||||
Sbjct 1453472 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 1453413
Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267
|||| |||||||| || || || ||||||||||||||| ||||||||
Sbjct 1453412 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 1453364
>seq37045
Length=3135053
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 1577066 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1577125
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 1577126 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 1577185
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| |||||||| || ||
Sbjct 1577186 TTCTCCATAAAGTCAAATGGGTTCTC 1577211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530999813234880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |