Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9420 338 8e-88 seq43468 116 5e-21 seq37045 114 2e-20 seq19734 114 2e-20 >seq9420 Length=356144 Score = 338 bits (374), Expect = 8e-88 Identities = 643/939 (68%), Gaps = 26/939 (3%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 |||| |||||| |||| || | |||| ||| ||| | || |||| |||||||| Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | || || || | || | || || || || || || |||| | ||| ||||| | Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 52661 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||| || ||||| || || || | ||| || | || |||| ||| || Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||| || || || || || || ||| ||||| | |||||||| || ||| | | Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 | || || | ||| |||| || ||||| ||||| || || |||| | || || Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839 Query 33254 ATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 ||| || | | || || | | | | || | | ||||| ||||||| || || ||| Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTG-TGTACCAGGTGTTTGAACATCAGGCAAGCAAAA 52898 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||||| | |||||| ||||| ||||| ||||| |||||||| ||||| || ||||| Sbjct 52899 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 || || || || || ||||| ||||| || || || | |||||||||| | ||||| Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 53015 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33489 ||||||||||| | | || | || ||||| | | | |||| ||||| | Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 |||||||| |||||||| || ||||||||||||||||| ||||||| | |||| | Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 | |||| || |||||| | ||||| || || | | |||||||||||| ||||| Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 ||||| || ||||| || || || || ||||||| | || || || ||||| |||||| Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255 Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729 | |||||| ||| |||| |||||||| ||||| || ||||| |||||||| || || Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315 Query 33730 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----AT 33785 | ||||| |||||||| | | || | ||| || ||||| || || || Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCC---CAGTGCCAAAT 53371 Query 33786 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33845 || || || | || || || || | ||||| || || || || ||||| |||||||| Sbjct 53372 GTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 53431 Query 33846 GTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | |||||| |||| || | | | ||||| || ||||| Sbjct 53432 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq43468 Length=1795776 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 1441964 >seq37045 Length=3135053 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341 Query 33446 C 33446 | Sbjct 1579342 C 1579342 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 Query 33684 CGCC 33687 | || Sbjct 1581447 CACC 1581450 >seq19734 Length=6466590 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 5938508 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| ||||||||||||||||||||||| | || |||||||||| | Sbjct 5924698 CTCCACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 5924639 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 5924638 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 5924579 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || |||| ||| || || | ||||||| || Sbjct 5924578 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 5924546 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 5935841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 5935782 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 5935781 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 5935722 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 5935721 CTGTTTCTTATACCATA 5935705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621891989737920