Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq42510 104 2e-17
seq39797 104 2e-17
seq33539 100 2e-16
seq44074 95.1 1e-14
seq43693 86.0 5e-12
>seq42510
Length=1301382
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || ||
Sbjct 87354 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 87295
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || || ||||| ||||| | || ||||
Sbjct 87294 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 87235
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 87234 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 87175
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| |||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 87174 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 87125
>seq39797
Length=2305578
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || ||
Sbjct 1756923 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 1756982
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || || ||||| ||||| | || ||||
Sbjct 1756983 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1757042
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 1757043 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1757102
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| |||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 1757103 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 1757152
>seq33539
Length=658333
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || || || || ||||| ||| |||| || ||
Sbjct 236825 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 236766
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || || ||||| ||||| | || ||||
Sbjct 236765 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 236706
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||| ||| | ||||||| || || | || ||
Sbjct 236705 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 236646
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| |||||||| ||||||||| | ||| | ||||||||| | || || ||
Sbjct 236645 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 236596
>seq44074
Length=2336235
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342
|||||||| ||||| || ||||| || ||||| || ||||| || |||| || |
Sbjct 1652955 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACTC 1652896
Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
|| || | | | | ||||| || || ||||| ||||| | || ||||
Sbjct 1652895 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1652836
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
||||||||||| || | ||| ||||| ||| | ||||||| | || || | || ||
Sbjct 1652835 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGAGTAC 1652776
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| |||||||| ||||||||| | ||| | | ||||||| | || || ||
Sbjct 1652775 AATATTCAAAAGGAGTCTACTCTTCATCTTGCGTTGAGACTTCGTGGTGG 1652726
>seq43693
Length=2839110
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/134 (73%), Gaps = 11/134 (8%)
Strand=Plus/Plus
Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438
||||| ||||| || || ||||||||||||||| || | ||| ||||| ||||| |||
Sbjct 374632 GATAAGGAAGGAGTTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAATTGGAA 374691
Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498
| ||| | || || ||||||||||| ||||||||| | ||| | ||||||
Sbjct 374692 G-----------ATGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 374740
Query 115499 AGATTGCGAGGAGG 115512
||| | || || ||
Sbjct 374741 AGACTTCGTGGTGG 374754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424641522053440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |