Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq83510 131 2e-25 seq68558 114 1e-20 seq45083 107 2e-18 seq42152 107 2e-18 seq38975 107 2e-18 seq44056 102 8e-17 seq42510 89.7 5e-13 seq39797 89.7 5e-13 seq33539 89.7 5e-13 seq43203 82.4 7e-11 >seq83510 Length=277 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| ||||| || || |||||||| || Sbjct 232 CCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 173 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGA 113 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||| | | || | |||||||| | ||||| Sbjct 112 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACC 53 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || ||||| ||||| |||||||| Sbjct 52 TCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 6 >seq68558 Length=238 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131041 GACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCG 131100 |||||||| || |||||||| ||| | ||| || |||||| |||||||| || ||| Sbjct 237 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCCAGCTGCTTTCCGGCG 178 Query 131101 TAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC 131160 |||| ||||||||||| ||||| || || ||||| ||||| ||| || ||||| Sbjct 177 AAGATCAAACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 118 Query 131161 TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTT 131220 | || | || |||| | ||| | || | ||| | ||| || || || || ||||| Sbjct 117 TTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTGCCCGTGAGGGTTTTG 58 Query 131221 ACGAAAATCTGCATGACT 131238 ||||| ||||||||| || Sbjct 57 ACGAAGATCTGCATGCCT 40 >seq45083 Length=200 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||||||||| ||||||||||| ||| Sbjct 186 CCACCACGAAGACGGAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCACTC 127 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| | || |||||||| ||||| || ||| Sbjct 126 AAGGTGCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGTGGG 67 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 66 ATTCCCTCCTTGTC 53 >seq42152 Length=979470 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||| || | || | |||||||||||| || |||||||| || Sbjct 315284 AGCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 315343 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | ||||||||| || | Sbjct 315344 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 315403 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 315404 GGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 315463 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 315464 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315512 Score = 104 bits (114), Expect = 2e-17 Identities = 168/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | |||||||||||| || |||||||| || Sbjct 315742 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315801 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| || || Sbjct 315802 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315861 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| ||| | | || | || || ||| ||| | Sbjct 315862 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315921 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA---TGACTTATTTT 131244 || | ||| | ||| || ||||| || || || ||||| ||||||| |||| || ||| Sbjct 315922 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGACCTAGTTT 315981 Query 131245 A 131245 | Sbjct 315982 A 315982 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | |||||||||||| || |||||||| || Sbjct 315514 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315573 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| | | ||||||||| || || Sbjct 315574 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315633 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| ||| | | || | || || ||| ||| | Sbjct 315634 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315693 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 315694 TCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315740 >seq38975 Length=485 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||| |||||||||||||||||||| Sbjct 373 CCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGAATGTTGTAATCCGAA 314 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||||| | |||||| || || |||| || || || ||||| || ||| Sbjct 313 AGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGTCGGGTGGG 254 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| ||| | | || | |||||| | || || | Sbjct 253 ATACCCTCCTTATCTTGGATCTTCGCCTTAACGTTATCAATAGTATCTGATGATTCTACT 194 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || | ||| || |||||||||||||| Sbjct 193 TCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||||| || || ||||||||||||||||||||| Sbjct 145 CCACCACGTAGACGAAGGACCAAATGTAATGTTGATTCCTTTTGAATGTTGTAATCGGAG 86 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || || |||| | ||| || || || || ||| Sbjct 85 AGGGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGG 26 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 25 ATACCCTCCTTGTC 12 >seq44056 Length=626226 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||| ||| | || | ||| ||||| || || |||||||| || Sbjct 244786 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 244845 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || ||||| ||||| || | || | |||||||||||| || || Sbjct 244846 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 244905 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || |||| | ||| | || || ||| ||||| Sbjct 244906 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || | || ||||| || ||||||||| Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 245014 >seq42510 Length=1301382 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || |||||||||||||| ||||| || | Sbjct 87125 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 87184 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| | | ||||| || ||||| Sbjct 87185 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 87244 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | || || | Sbjct 87245 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 87304 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 87305 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 87351 >seq39797 Length=2305578 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || |||||||||||||| ||||| || | Sbjct 1757152 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1757093 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| | | ||||| || ||||| Sbjct 1757092 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1757033 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | || || | Sbjct 1757032 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 1756973 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 1756972 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1756926 >seq33539 Length=658333 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || |||||||||||||| ||||| || | Sbjct 236596 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 236655 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| || |||| | | ||||| || ||||| Sbjct 236656 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 236715 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | || || | Sbjct 236716 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACC 236775 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 236776 TCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 236822 >seq43203 Length=1387722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| ||| |||| || | || ||||| |||| ||||| |||||||| || Sbjct 881583 GCCACCTTGCAGGTGCAGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGA 881642 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| ||||||||||| || | || | |||||||||||| || || Sbjct 881643 GAGAGTGAGGCCATCCTCCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 881702 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || |||| | ||| || | ||| ||||| Sbjct 881703 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGA 881761 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || | |||||| Sbjct 881762 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 881810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471213257518080