Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq112392 113 4e-20 seq44056 111 1e-19 seq69637 107 2e-18 seq44178 98.7 9e-16 seq83510 96.9 3e-15 seq97443 91.5 1e-13 seq38975 89.7 4e-13 seq41127 86.0 5e-12 seq45083 84.2 2e-11 >seq112392 Length=498 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| || Sbjct 347 ATGCAGATTTTTGTTAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTTGAGAGTTCG 288 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| ||||| | ||| ||||| || ||||| || |||||||| Sbjct 287 GATACCATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGGATCCCCCCTGACCA 229 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||||| | || ||||| || ||||| | || |||| || ||| ||| ||| || || Sbjct 228 ACAGCGGTTGATCTTTGCTGGAAAACAGCTGGAGGATGGCCGTACTTTGGCCGACTATAA 169 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 |||||| || || ||||| || || Sbjct 168 TATTCAGAAGGAGTCCACCCTCCA 145 >seq44056 Length=626226 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| || || ||| ||||||| | || || ||| | | Sbjct 245013 ATGCAGATCTTTGTAAAGACCCACACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 244954 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || ||| ||| |||| |||| ||| ||||| || || || |||||||| Sbjct 244953 GACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGA 244898 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||||||||| | ||||||| |||||| | || || Sbjct 244897 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 244838 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| || || ||||| ||||| || || Sbjct 244837 CAACATCCACAAAGAGTCCACCCTGCA 244811 >seq69637 Length=240 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 70 ATGCAAATCTTTGTCAAGACCCTGACTGGTAAGACCATCACACTTGAGGTCGAACCTTCA 129 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| |||||| ||||||||||| || ||||||||||| Sbjct 130 GACACAATCGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATCCCACCTGACCAG 189 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||| | || || ||||| || || | ||||||| ||||| Sbjct 190 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCAC 233 >seq44178 Length=3241816 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | || || ||| ||||||| | || || | Sbjct 924718 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCG 924659 Query 25051 AGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 || | |||||| || ||| | || |||| |||| ||| ||||| || || || | Sbjct 924658 AGCCCAGTGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCC 924602 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 |||||||||| ||||| | || |||||||||||||| | ||||||| |||||| Sbjct 924601 CACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACT 924546 >seq83510 Length=277 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| | || || ||| | || Sbjct 6 ATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATCACCCTTGAGGTCGAGCCTTCC 65 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 66 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 125 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| | || ||||| Sbjct 126 CAGCGACTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGACTACAAC 185 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||| ||||| || || | ||||| |||| Sbjct 186 ATCCAGAAAGAGTCCACCCTTCACCTGGTGCTGCGGCT 223 >seq97443 Length=343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| ||| Sbjct 25 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAGGTTGAGAGCTCT 84 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| || || ||||| |||||||| ||||| ||||| Sbjct 85 GATACTATTGATAATGTGAAGGCCAAGATACAGGACAAGGAAGGGATCCCACCAGACCAG 144 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || || | || |||| | ||| ||| ||||||||| Sbjct 145 CAACGTTTGATCTTTGCTGGGAAGCAGCTTGAGGATGGGAGGACTTTGGCGGATTACAAT 204 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 205 ATCCAGAAGGAGTCTACCCTTCA 227 >seq38975 Length=485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || |||| ||| | ||||| || || || Sbjct 147 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATTACATTAGAAGTAGAATCATCA 206 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | || | ||| || ||| || || || || || ||||| ||||| Sbjct 207 GATACTATTGA-TAACGTTAAGGCGAAGATCCAAGATAAGGAGGGTATCCCACCCGACCA 265 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || || || || | | || | |||||||| Sbjct 266 ACAACGATTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCCTTTCGGATTACAA 325 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || | || || ||||| Sbjct 326 CATTCAAAAGGAATCGACATTGCACTTGGTGCT 358 >seq41127 Length=7874669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| ||||| | | || || ||| | | Sbjct 7358028 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAAACCATCCCCCTTGAGGTCGAGCCCAGT 7357969 Query 25059 GACACTATCGAG--TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | || |||| ||| ||| |||| || || || |||||||||| Sbjct 7357968 GACACCATTGAGAATGACA-AAGCCAAAGTTCAAC-ACAAGGAGGGTATCCCACCTGACC 7357911 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | || ||||| |||||||| | ||||||| |||||| | || |||| Sbjct 7357910 AGTAGCATCTGATATTTGCTGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACA 7357851 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || ||||| ||||| || || Sbjct 7357850 ACATCCAGAAAGAGTCCACCCTGCA 7357826 >seq45083 Length=200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || ||||| ||||||||||| | ||||| ||||| || ||| | || Sbjct 53 GACAAGGAGGGAATCCCACCCGACCAACAGCGTTTGATTTTCGCCGGAAAGCAACTTGAG 112 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||| || | |||||||| || ||||| || || || || ||| | || || Sbjct 113 GATGGTCGCACCTTGAGTGATTACAACATCCAAAAGGAGTCTACTCTCCATCTCGTTCT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432612336058280