Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9420 268 1e-66 seq30183 140 4e-28 seq37045 100 3e-16 >seq9420 Length=356144 Score = 268 bits (296), Expect = 1e-66 Identities = 534/785 (68%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 ||| || || ||||| || ||||| || ||| | | |||||||| || | | | Sbjct 52721 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTT 52780 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 ||||| | || || || | ||| || | || || ||| || | | | ||||| Sbjct 52781 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTC 52840 Query 93043 TATTACTCTACTATTTG-GTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | ||||||| ||| | ||||||| ||||| | | ||| |||| | ||| ||||| | Sbjct 52841 TCTTACTCT-CTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 52899 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAAC 93160 | |||||||| || |||| || || || | ||||| ||||| | || || | | Sbjct 52900 CACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 |||||||||||||||||||| ||||| || |||||| ||||||||| | | |||||| Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 53015 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 | || ||||| | |||| |||||| || | | || || | ||||| | Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 || |||||||| || || ||||| | |||||| | ||||| | || || | || | Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || | || | | |||| |||||| || || || | | | ||||||||||||||| Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | ||||| || ||||||||||| || ||||||| | ||||| || ||||| |||||| Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 || ||||| ||| || | |||||||| ||||| ||||| ||||||||| ||| || Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| |||||||| | |||| | || || ||||| | | | || Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATGTCC 53375 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || || || || ||| | ||||| || || ||||| || || || ||||| | | Sbjct 53376 TTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGC 53435 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || || || || | | || || |||||||| || | ||| ||| | || | | Sbjct 53436 CAGATATCATGGTACTCGGTGGGGAAGATGACAAAGCGCCAGGAGTTTTCTCTCAGCAGC 53495 Query 93701 GGCTC 93705 ||||| Sbjct 53496 GGCTC 53500 >seq30183 Length=85853 Score = 140 bits (154), Expect = 4e-28 Identities = 362/547 (66%), Gaps = 5/547 (1%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 |||||||| || || | || || || | ||||| ||||| | || || | |||||| Sbjct 31458 TGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCC 31516 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 ||||||||||||||| ||||| |||||| ||||||||| | | | |||||| Sbjct 31517 TCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACTAG 31576 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 ||||| || ||| || ||| || | || || | | ||||| | || | Sbjct 31577 GGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAGAC 31636 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCG 93345 |||| | || || ||||| | || ||| | |||||| || || || || || | || | Sbjct 31637 CCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCCCT 31695 Query 93346 CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405 || | |||| ||| ||| || || | ||| || || |||||||| || Sbjct 31696 TTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTATGTCAGAATGTGTGTT 31753 Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 || | ||| ||||||| || ||||| || | ||| || ||||| | |||||||| Sbjct 31754 TTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTGAGC 31813 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 |||| || || | ||||||| ||||| ||||| |||||||||| ||||||| || Sbjct 31814 AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAGAAT 31873 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 || |||||||| | | || ||| || || ||||| | | | || || || Sbjct 31874 ATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGA 31933 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || || ||||| | | | |||| || || | ||| |||| || ||| | | ||| || Sbjct 31934 CAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTTCCAAAT 31993 Query 93646 GTCTTGA 93652 || ||| Sbjct 31994 ATCATGA 32000 >seq37045 Length=3135053 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 1579242 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 1579301 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 1579302 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 1579354 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446 Query 93475 TAC 93477 || Sbjct 1581447 CAC 1581449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555917533490880