Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 268 1e-66
seq30183 140 4e-28
seq37045 100 3e-16
>seq9420
Length=356144
Score = 268 bits (296), Expect = 1e-66
Identities = 534/785 (68%), Gaps = 7/785 (1%)
Strand=Plus/Plus
Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982
||| || || ||||| || ||||| || ||| | | |||||||| || | | |
Sbjct 52721 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTT 52780
Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042
||||| | || || || | ||| || | || || ||| || | | | |||||
Sbjct 52781 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTC 52840
Query 93043 TATTACTCTACTATTTG-GTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
| ||||||| ||| | ||||||| ||||| | | ||| |||| | ||| ||||| |
Sbjct 52841 TCTTACTCT-CTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 52899
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAAC 93160
| |||||||| || |||| || || || | ||||| ||||| | || || | |
Sbjct 52900 CACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 52958
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220
|||||||||||||||||||| ||||| || |||||| ||||||||| | | ||||||
Sbjct 52959 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 53015
Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280
| || ||||| | |||| |||||| || | | || || | ||||| |
Sbjct 53016 GCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGC 53075
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340
|| |||||||| || || ||||| | |||||| | ||||| | || || | || |
Sbjct 53076 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAAT 53135
Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400
|| | || | | |||| |||||| || || || | | | |||||||||||||||
Sbjct 53136 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGT 53195
Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460
| ||||| || ||||||||||| || ||||||| | ||||| || ||||| ||||||
Sbjct 53196 ATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCT 53255
Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520
|| ||||| ||| || | |||||||| ||||| ||||| ||||||||| ||| ||
Sbjct 53256 TGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 53315
Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580
| | ||| |||||||| | |||| | || || ||||| | | | ||
Sbjct 53316 AGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATGTCC 53375
Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640
|| || || || || || ||| | ||||| || || ||||| || || || ||||| | |
Sbjct 53376 TTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGC 53435
Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700
|| || || || || | | || || |||||||| || | ||| ||| | || | |
Sbjct 53436 CAGATATCATGGTACTCGGTGGGGAAGATGACAAAGCGCCAGGAGTTTTCTCTCAGCAGC 53495
Query 93701 GGCTC 93705
|||||
Sbjct 53496 GGCTC 53500
>seq30183
Length=85853
Score = 140 bits (154), Expect = 4e-28
Identities = 362/547 (66%), Gaps = 5/547 (1%)
Strand=Plus/Plus
Query 93107 TGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCC 93165
|||||||| || || | || || || | ||||| ||||| | || || | ||||||
Sbjct 31458 TGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCC 31516
Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225
||||||||||||||| ||||| |||||| ||||||||| | | | ||||||
Sbjct 31517 TCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAGGTGCTTTCCACTAG 31576
Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285
||||| || ||| || ||| || | || || | | ||||| | || |
Sbjct 31577 GGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCAATCCAATACAAGAC 31636
Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCG 93345
|||| | || || ||||| | || ||| | |||||| || || || || || | || |
Sbjct 31637 CCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTCCCT 31695
Query 93346 CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405
|| | |||| ||| ||| || || | ||| || || |||||||| ||
Sbjct 31696 TTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGATTATTTATGTCAGAATGTGTGTT 31753
Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465
|| | ||| ||||||| || ||||| || | ||| || ||||| | ||||||||
Sbjct 31754 TTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTGAGC 31813
Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525
|||| || || | ||||||| ||||| ||||| |||||||||| ||||||| ||
Sbjct 31814 AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAGAAT 31873
Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA 93585
|| |||||||| | | || ||| || || ||||| | | | || || ||
Sbjct 31874 ATAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGA 31933
Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| || ||||| | | | |||| || || | ||| |||| || ||| | | ||| ||
Sbjct 31934 CAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTCTTATACGTTTTCCAAAT 31993
Query 93646 GTCTTGA 93652
|| |||
Sbjct 31994 ATCATGA 32000
>seq37045
Length=3135053
Score = 100 bits (110), Expect = 3e-16
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | ||||||||||||||||||||| ||||| || |||
Sbjct 1579242 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 1579301
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||| ||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 1579302 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 1579354
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414
|||| |||||| || || || | ||| ||||||||||||||| | || ||||| ||
Sbjct 1581327 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1581386
Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474
||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct 1581387 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 1581446
Query 93475 TAC 93477
||
Sbjct 1581447 CAC 1581449
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555917533490880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |