Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq44074 96.9 2e-15 seq42510 96.9 2e-15 seq39797 96.9 2e-15 seq33539 96.9 2e-15 seq44363 86.0 4e-12 seq36884 86.0 4e-12 seq40450 82.4 5e-11 seq17706 82.4 5e-11 >seq44074 Length=2336235 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| || | || ||| Sbjct 1652956 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACT 1652897 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| ||| | | || | ||| || || ||||| || || | ||| | Sbjct 1652896 CTCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1652837 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | | ||| || | || || Sbjct 1652836 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGAGTA 1652777 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||| ||||| |||||||||||| Sbjct 1652776 CAATATTCAAAAGGAGTCTACTCTTCAT 1652749 >seq42510 Length=1301382 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 87355 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 87296 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 87295 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 87236 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 87235 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 87176 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 87175 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87140 >seq39797 Length=2305578 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 1756922 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 1756981 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 1756982 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 1757041 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 1757042 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 1757101 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 1757102 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1757137 >seq33539 Length=658333 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | || || || ||||| ||| | || ||| | Sbjct 236826 CAAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACC 236767 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| ||| | | || | ||| || || ||||| || || | ||| | Sbjct 236766 CTCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 236707 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || || Sbjct 236706 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 236647 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 236646 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 236611 >seq44363 Length=166659 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 137983 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 138042 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||| ||||| |||||||||||| | || || Sbjct 138043 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 138077 >seq36884 Length=899181 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 628521 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 628462 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||| || || |||||||||||| | || || Sbjct 628461 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTT 628427 >seq40450 Length=975263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | ||||| ||| ||| || || || ||| | || ||| | Sbjct 16120 CAAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACC 16061 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| |||| | || | ||| || || ||||| || || | ||| | Sbjct 16060 CTCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 16001 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||| | ||||| |||||| | ||| || | || | Sbjct 16000 TCAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTG 15941 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| ||||| ||||| ||||||||||| Sbjct 15940 CAACATTCAAAAGGAGCCTACTCTTCAT 15913 >seq17706 Length=950375 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||| | | ||| || | || ||| Sbjct 545179 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTTGTCTGACTAC 545120 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||| ||||| |||||||||||| | || || Sbjct 545119 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 545085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357533338091248