Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq42510 114 1e-20 seq39797 114 1e-20 seq33539 114 1e-20 seq36884 111 1e-19 seq38975 102 7e-17 seq21918 98.7 8e-16 seq44074 96.9 3e-15 seq40450 96.9 3e-15 seq45083 95.1 1e-14 seq112392 89.7 4e-13 seq42152 89.7 4e-13 seq31443 86.0 5e-12 >seq42510 Length=1301382 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 87124 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 87183 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 87184 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 87243 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 87244 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 87303 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 87304 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 87351 >seq39797 Length=2305578 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 1757153 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 1757094 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 1757093 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1757034 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 1757033 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 1756974 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 1756973 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1756926 >seq33539 Length=658333 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 236592 AACACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTC 236651 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || |||||| |||||| ||||| || ||||| |||| || | || || || || Sbjct 236652 AGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGG 236711 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| || || ||||| |||| | ||| | || || | || ||| Sbjct 236712 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTC 236771 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| || ||||||||||| Sbjct 236772 AACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 236822 >seq36884 Length=899181 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| || ||||| | ||||| ||||||||||| ||||| || || | Sbjct 628415 CCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAA 628474 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| || ||||| |||| || | ||| || | |||||||| Sbjct 628475 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAATT 628534 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || | ||||| | || | ||| | ||||| | || ||| || || Sbjct 628535 CCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAACCTCG 628594 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || || || ||| | || ||||||||||| Sbjct 628595 AGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 628638 >seq38975 Length=485 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | || ||||||| || ||||| |||||||||||||||||| Sbjct 148 ATACCACCACGTAGACGAAGGACCAAATGTAATGTTGATTCCTTTTGAATGTTGTAATCG 89 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| |||||||| |||||||| |||| ||||| ||||| || || Sbjct 88 GAGAGGGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGT 29 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT 114298 || || || || ||||| |||||| Sbjct 28 GGGATACCCTCCTTGTCTTGAATCTT 3 >seq21918 Length=9848887 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || || || ||| Sbjct 7768239 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 7768298 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| |||||||||||||| ||||| |||||| || Sbjct 7768299 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTG 7768358 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||| ||||| || Sbjct 7768359 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 7768418 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 7768419 TTCACGAAGATCTGCAT 7768435 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || || || ||| Sbjct 7768695 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 7768754 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| |||||||||||||| || || |||||| || Sbjct 7768755 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTG 7768814 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| ||||| || | ||| | || ||||| ||||| || Sbjct 7768815 ACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 7768874 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 7768875 TTCACGAAGATCTGCAT 7768891 >seq44074 Length=2336235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| | | ||| | ||||| || |||||||| ||||| || Sbjct 1652725 ACCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTACTCAGA 1652784 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 1652785 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1652844 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | | ||| || Sbjct 1652845 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGAGTTCAAC 1652904 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || ||||| || ||||||||||| Sbjct 1652905 CTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1652952 >seq40450 Length=975263 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | |||| || |||||||||||| | || Sbjct 15889 ACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGA 15948 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| | ||||| |||| || | || || || ||||| Sbjct 15949 CAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 16008 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 16009 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAAC 16068 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || | || ||||| |||||||||||||| Sbjct 16069 CTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCAT 16116 >seq45083 Length=200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | ||||| || ||||| ||||||||||| Sbjct 189 ATACCACCACGAAGACGGAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCA 130 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| ||| |||||||| || || ||| | || | |||||||||||| || Sbjct 129 CTCAAGGTGCGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGT 70 Query 114273 GGAATGCCTTCTTTGTC 114289 || || || || ||||| Sbjct 69 GGGATTCCCTCCTTGTC 53 >seq112392 Length=498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||| || || ||| || |||||| ||| || || ||||| ||| Sbjct 151 GTGGACTCCTTCTGAATATTATAGTCGGCCAAAGTACGGCCATCCTCCAGCTGTTTTCCA 210 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | ||||||||||| || || || || || ||||| ||||||| ||| Sbjct 211 GCAAAGATCAACCGCTGTTGGTCAGGGGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTC 270 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || || |||| ||| | || || || |||| || Sbjct 271 ACATTATCAATGGTATCCGAACTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 330 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 331 TTAACAAAAATCTGCAT 347 >seq42152 Length=979470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 315316 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 315375 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 315376 GCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 315435 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 315436 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 315495 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 315496 TTCACGAAGATCTGCAT 315512 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 315544 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 315603 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || || || || Sbjct 315604 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 315663 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 315664 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATAGTCTTGCCGGTCAGGGTC 315723 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 315724 TTCACGAAGATCTGCAT 315740 >seq31443 Length=2148293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | || | || |||||||||||||| | | Sbjct 2078349 ACCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGT--CA 2078406 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| |||||| ||||| || ||||| |||| || | ||| | || ||||| Sbjct 2078407 GACAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGG 2078466 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||| || || ||||| |||| | ||| | || || ||| |||||| Sbjct 2078467 AATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCATGGGTTCGAC 2078526 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | ||| || || || || || || | ||||| ||||||||| Sbjct 2078527 CTCGAGGGTGACAGTCTTCCCCGTAAG-GATTTTATGAAAATCTGC 2078571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419440525981344