Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9420 152 1e-31 seq43468 84.2 4e-11 seq37045 84.2 4e-11 >seq9420 Length=356144 Score = 152 bits (168), Expect = 1e-31 Identities = 388/581 (67%), Gaps = 11/581 (2%) Strand=Plus/Minus Query 42287 CGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGA 42346 |||| |||| || |||||| ||||| ||||||||| | ||| |||||||||||| Sbjct 53453 CGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGA 53394 Query 42347 GGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGTCTGAGAACGAAA-A 42403 |||| | |||||| ||||||||| ||| |||||| || ||| || || | | Sbjct 53393 GGAGGTGGACCTGTCCAAGGACATTTGGCA--CTGGGAATCCCTGAAGCCCAAGGAGAGA 53336 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | |||| | | | |||| ||||| || || ||| |||||||| ||||| || Sbjct 53335 GATTTTA-TATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAA 53277 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 | ||| | || | |||| || ||| || || ||||| |||| ||||| Sbjct 53276 CTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTT 53217 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 ||| || |||||||||||| | || ||||| |||| || | |||| ||||| Sbjct 53216 CCAAATTGCCATAGAGAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTTACAT 53157 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 |||||| || | | || |||| |||| || |||||||| || |||| Sbjct 53156 AAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAA 53097 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||||||||| || ||||| | ||||||| | | || || || | || || | Sbjct 53096 GAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACG 53037 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 | |||| |||| | || | || |||||||| |||| || || || || || || Sbjct 53036 TGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCATCGATATT 52980 Query 42764 CTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| | ||| | |||||| || ||||| || || || ||||| || |||| Sbjct 52979 CTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCA 52921 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| | || | || ||||| ||||| ||||| Sbjct 52920 GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 52880 >seq43468 Length=1795776 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 1441959 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 1442018 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 1442019 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 1442077 Query 42825 GACGA 42829 || || Sbjct 1442078 GATGA 1442082 >seq37045 Length=3135053 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 1579345 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 1579286 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 1579285 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 1579227 Query 42827 CGAGG 42831 |||| Sbjct 1579226 TGAGG 1579222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942739583829120