Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq106333 152 4e-32 seq41455 93.3 3e-14 >seq106333 Length=418 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 173 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 113 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 76 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 173 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 113 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 76 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 235 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 235 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 184 >seq41455 Length=627 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TA-AGATCTAAGGA 115585 |||||||| |||||||||||||||| ||||||||||||| || | || ||||| || || Sbjct 153 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTGTGGGTACAGATCCAATGA 94 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | || | ||||| || ||||||||||| ||| ||| ||||| Sbjct 93 ATCATAGCTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 53 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/101 (83%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TA-AGATCTAAGGA 114388 |||||||| |||||||||||||||| ||||||||||||| || | || ||||| || || Sbjct 153 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAGTGTGGGTACAGATCCAATGA 94 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | || | ||||| || ||||||||||| ||| ||| ||||| Sbjct 93 ATCATAGCTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396406630600624