Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 102 8e-17
seq112392 93.3 4e-14
seq68558 91.5 1e-13
seq83510 86.0 6e-12
seq19734 82.4 8e-11
>seq44056
Length=626226
Score = 102 bits (112), Expect = 8e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||||| ||||| || | || | | | ||||| || || |||||||||||
Sbjct 244786 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 244845
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || || || ||||| |||| | | || |||||||| ||||| || ||
Sbjct 244846 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 244905
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| |
Sbjct 244906 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | ||||| || || | || |||||||| |||||||||
Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 245014
>seq112392
Length=498
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||| || |||||| || |||||| ||||| || ||||| || | |
Sbjct 154 GACTCCTTCTGAATATTATAGTCGGCCAAAGTACGGCCATCCTCCAGCTGTTTTCCAGCA 213
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| | ||||||||||| || || || || || ||||| ||| | |||| ||| |
Sbjct 214 AAGATCAACCGCTGTTGGTCAGGGGGGATCCCCTCCTTGTC-CTGAATCTTTGCTTTCAC 272
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||| || | ||| ||||| | || | || || ||||||| || ||
Sbjct 273 ATTATCAATGGTATCCGAACTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTT 332
Query 138600 TACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 333 AACAAAAATCTGCAT 347
>seq68558
Length=238
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||||| |||||| || || || ||||
Sbjct 237 GACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCCAGCTGCTTTCCGGCG 178
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | |||||| || ||||| || || ||||| ||||| ||| || || |
Sbjct 177 AAGATCAAACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 118
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||| | || | || || || || || |||||
Sbjct 117 TTGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTGCCCGTGAGGGTTTTG 58
Query 138601 ACAAAAATCTGCATGGCT 138618
|| || ||||||||| ||
Sbjct 57 ACGAAGATCTGCATGCCT 40
>seq83510
Length=277
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | ||||| || || |||||||||||
Sbjct 232 CCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 173
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || || |||| | |||| || ||||| ||||| |||||
Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGA 113
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||| ||||| ||| || || | | ||| | || |||| | ||| |||
Sbjct 112 ATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACC 53
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || ||||| ||||| || || ||||||||
Sbjct 52 TCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 6
>seq19734
Length=6466590
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||||| ||| || || | ||| |||||||||||||| ||| |||| || ||||| |
Sbjct 5926309 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 5926250
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|||| || ||||| || | |||||| ||||||| |||||
Sbjct 5926249 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGG 5926210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495421781120640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |