Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq44056 95.1 1e-14 seq45083 84.2 2e-11 seq38975 82.4 7e-11 >seq44056 Length=626226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || ||||| || || || || ||||| || || || Sbjct 244784 ATGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCT 244843 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| |||| ||||| || || |||||| || |||||||| || Sbjct 244844 GAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGT 244903 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||||||||| ||||| || | || | |||||| | ||| Sbjct 244904 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCTC 244962 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | |||||||| || | || |||||||| || ||||| Sbjct 244963 GACCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 245013 >seq45083 Length=200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||||||||| || ||||| || | ||| | ||| || Sbjct 168 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCACTCAAGGTGCGACCATCCTCA 109 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | ||||| || || ||||| || || || || || || ||||| Sbjct 108 AGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGG 49 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAG 45298 || || |||| || | || | ||| |||||||| || || ||||| Sbjct 48 ATCTTGGCCTTGA-CGTTGTCGATGGTATCGGAAGATTCAACCTCGAG 2 >seq38975 Length=485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 45108 TTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 |||||| || || || || | | ||| | |||| || ||||||||||| || || | Sbjct 381 TTTATTGACCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGAATGTTGT 322 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 |||| | |||| | || ||||| || ||||| || | ||||||||||| |||| Sbjct 321 AATCCGAAAGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGT 262 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAA 45284 | || || || || || |||||||| | | || | | | || | || | || || || Sbjct 261 CGGGTGGGATACCCTCCTTATCTTGGA-TCTTCGCCTTAACGTTATCAATAGTATCTGAT 203 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | |||| || || || || | ||| || || ||||| ||||| Sbjct 202 GATTCTACTTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451237551779520