Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1269 188 1e-42 seq43696 118 2e-21 >seq1269 Length=3008169 Score = 188 bits (208), Expect = 1e-42 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| |||||||||||||| || || ||||| || |||||||| || Sbjct 1529998 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 1529939 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 1529938 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 1529879 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 1529878 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 1529819 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 1529818 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 1529775 Score = 172 bits (190), Expect = 8e-38 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 1532006 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1531947 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || || || || |||||||| || || || || || || Sbjct 1531946 TGAAAACCCACTTCTCCACCAAAAGTACTTGGCTTCCAGTAGGCAGGAGAACATATAACA 1531887 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| ||||| || || | || | ||| ||||||| ||| Sbjct 1531886 TTACCCATAAGTCCTTTCAAGGAGAACGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1531827 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || ||||| |||| | Sbjct 1531826 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 1531767 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || ||||| ||||||||||| |||| || ||||| || ||| Sbjct 1531766 TCACCGTAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 1531722 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 1528842 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 1528783 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || |||||||||| ||| |||||||||||||| Sbjct 1528782 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 1528723 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 1528722 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 1528663 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 1528662 CTTCTTACCTGA 1528651 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 1528231 TCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 1528172 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | ||||| Sbjct 1528171 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAGTT 1528112 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 1528111 GGTGGACTGTCAATCAAATGTGATCTGGCT 1528082 Score = 102 bits (112), Expect = 1e-16 Identities = 193/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || ||||| ||||| || | | | || Sbjct 1530582 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGCAATTCCATGTTCCAGTAATATA 1530523 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || ||| ||| || |||| ||| Sbjct 1530522 GAGTTGTTGTAGATAAACTGTTGATAGTTGTATTTCTGGTCATGAATTTGAAAGGTGTCA 1530463 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 1530462 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 1530403 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| || |||||||| | || | |||||| || || || Sbjct 1530402 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTCAGTTTGAAGTGATAGCCACTC 1530343 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 1530342 AAGTGCTGTACATAATCTTCAATCACAATCTTAATAGTCTCTCC 1530299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||||||| ||| | Sbjct 1527169 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATATTG 1527110 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || |||| ||||||||||| || Sbjct 1527109 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTAGGAACAGCAAGGATT 1527050 Query 10960 GGCTGCAATTTAA 10972 ||| |||| || Sbjct 1527049 TGCTATAATTAAA 1527037 >seq43696 Length=1423797 Score = 118 bits (130), Expect = 2e-21 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || ||||| || ||||| || ||||||||| Sbjct 1398859 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 1398800 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 1398799 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 1398740 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111 || || ||||| || || || | ||| | ||||| | || | |||| || ||| Sbjct 1398739 ATCATACTCTCCCCAAATATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGCCCAGGGTA 1398681 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| || | |||||||| || || ||||||||||| Sbjct 1398680 GAACTCCAACGCATCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTC 1398621 Query 9172 ACCTACAAG 9180 ||| |||| Sbjct 1398620 TCCTGCAAG 1398612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722502077140800