Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1269 188 1e-42
seq43696 118 2e-21
>seq1269
Length=3008169
Score = 188 bits (208), Expect = 1e-42
Identities = 176/224 (79%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| |||||||||||||| || || ||||| || |||||||| ||
Sbjct 1529998 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 1529939
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | ||||||
Sbjct 1529938 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 1529879
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | |||||| ||||| ||||||| || || |||| || | || | ||| |
Sbjct 1529878 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 1529819
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
|||| || |||||||| ||||| |||||||| || || |||||
Sbjct 1529818 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 1529775
Score = 172 bits (190), Expect = 8e-38
Identities = 209/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| |||||||| || || ||||| |||||||| | || || || | |||
Sbjct 1532006 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 1531947
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| ||||| || || || || || || || || |||||||| || || || || || ||
Sbjct 1531946 TGAAAACCCACTTCTCCACCAAAAGTACTTGGCTTCCAGTAGGCAGGAGAACATATAACA 1531887
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| ||||| || || | || | ||| ||||||| |||
Sbjct 1531886 TTACCCATAAGTCCTTTCAAGGAGAACGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 1531827
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|||||| | ||||| || ||||| || | | | ||| || || || ||||| |||| |
Sbjct 1531826 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 1531767
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| || ||||| ||||||||||| |||| || ||||| || |||
Sbjct 1531766 TCACCGTAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 1531722
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | ||
Sbjct 1528842 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 1528783
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || |||||||||| ||| ||||||||||||||
Sbjct 1528782 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 1528723
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300
||||| || | || | | || || ||| |||||||||| ||||||| || || |
Sbjct 1528722 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 1528663
Query 10301 CGCCTTACCTGA 10312
| |||||||||
Sbjct 1528662 CTTCTTACCTGA 1528651
Score = 122 bits (134), Expect = 1e-22
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| ||| || ||||| || | ||| |||
Sbjct 1528231 TCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 1528172
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || || || ||||||||||| ||||||||||| || | |||||
Sbjct 1528171 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAGTT 1528112
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||||||||||| | || ||||||
Sbjct 1528111 GGTGGACTGTCAATCAAATGTGATCTGGCT 1528082
Score = 102 bits (112), Expect = 1e-16
Identities = 193/284 (68%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || | ||||| |||||||| || ||||| ||||| || | | | ||
Sbjct 1530582 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGCAATTCCATGTTCCAGTAATATA 1530523
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| || || ||| ||| || |||| |||
Sbjct 1530522 GAGTTGTTGTAGATAAACTGTTGATAGTTGTATTTCTGGTCATGAATTTGAAAGGTGTCA 1530463
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| || | ||||||| | ||||||||||| ||||| || || || || || ||||||
Sbjct 1530462 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 1530403
Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675
|| || | ||| |||| || |||||||| | || | |||||| || || ||
Sbjct 1530402 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTCAGTTTGAAGTGATAGCCACTC 1530343
Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| ||||| ||||| | | || | ||| ||||| || || ||
Sbjct 1530342 AAGTGCTGTACATAATCTTCAATCACAATCTTAATAGTCTCTCC 1530299
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || || |||| | |||| || || ||||| |||||||||||| ||| |
Sbjct 1527169 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATATTG 1527110
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| ||||| |||| ||||| ||||| || || || |||| ||||||||||| ||
Sbjct 1527109 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTAGGAACAGCAAGGATT 1527050
Query 10960 GGCTGCAATTTAA 10972
||| |||| ||
Sbjct 1527049 TGCTATAATTAAA 1527037
>seq43696
Length=1423797
Score = 118 bits (130), Expect = 2e-21
Identities = 177/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || ||||||| || || | || ||||| || ||||| || |||||||||
Sbjct 1398859 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCGCCAAATGTGCTCGGCTTCCAGTAC 1398800
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| || || | |||||| |||||||| | |||
Sbjct 1398799 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 1398740
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111
|| || ||||| || || || | ||| | ||||| | || | |||| || |||
Sbjct 1398739 ATCATACTCTCCCCAAATATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGCCCAGGGTA 1398681
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| || | |||||||| || || |||||||||||
Sbjct 1398680 GAACTCCAACGCATCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTC 1398621
Query 9172 ACCTACAAG 9180
||| ||||
Sbjct 1398620 TCCTGCAAG 1398612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722502077140800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |