Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 134 2e-26
seq42152 129 7e-25
seq83510 114 1e-20
seq44178 107 2e-18
seq41127 107 2e-18
seq43203 98.7 1e-15
seq42510 95.1 1e-14
seq39797 95.1 1e-14
seq33539 89.7 6e-13
seq97443 82.4 9e-11
>seq44056
Length=626226
Score = 134 bits (148), Expect = 2e-26
Identities = 172/236 (73%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | ||||||||||| |||| || ||| || ||||| |||||||| |
Sbjct 244785 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTG 244844
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| |||||||| | || || ||||| |||||||| ||||||| ||||||||||| | |
Sbjct 244845 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 244904
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||||||||| || || |||| || | | ||||| || | || |
Sbjct 244905 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCA 46599
| || | ||||||||||||||||| | || || |||||||| ||||| ||||||
Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTTTGCA 245020
>seq42152
Length=979470
Score = 129 bits (142), Expect = 7e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||||| ||||| |||| || |||||| ||||| |||||||| ||
Sbjct 315742 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315801
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || ||||||||||| || || || | | ||||||||||| ||
Sbjct 315802 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315861
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||| ||| ||| || ||| | | | | ||||| || | |||||
Sbjct 315862 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315921
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| | |||||||| ||||| ||||| || || || ||||| |||||||||
Sbjct 315922 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 315972
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||||| ||||| |||| || |||||| ||||| |||||||| ||
Sbjct 315514 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 315573
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || ||||||||||| || || || | | ||||||||||| ||
Sbjct 315574 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 315633
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||| ||| ||| || ||| | | | | ||||| || | |||||
Sbjct 315634 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 315693
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || ||||| ||||| || || || ||||| |||||
Sbjct 315694 TCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315740
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | |||| ||||| |||| || |||||| ||||| |||||||| ||
Sbjct 315285 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 315344
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|||||||| | || || ||||||||||| || || || | | ||||||||||| ||
Sbjct 315345 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 315404
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || || || || |||||| ||| | | | | ||||| || | |||||
Sbjct 315405 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 315464
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||||| ||||| ||||| || || || ||||| |||||
Sbjct 315465 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315512
>seq83510
Length=277
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| || | || ||| || ||||| |||||||| || || ||||| |
Sbjct 220 CGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 161
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||||||||| || |||| ||||||||||| | || | | ||||||
Sbjct 160 TCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGAATACCTTCCTTG 101
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| ||||||| ||| | | | | || ||| | || || || | ||||||
Sbjct 100 TCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACCTCAAGGGTGATG 41
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || |||||||| ||||| || ||||| ||||| ||
Sbjct 40 GTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3
>seq44178
Length=3241816
Score = 107 bits (118), Expect = 2e-18
Identities = 135/184 (73%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475
||||||| || |||||||| | || || ||||| |||||||| ||||||| |||||||
Sbjct 924533 TGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCT 924592
Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535
|||| | || | | ||||||||| || || |||| || | | ||||| |
Sbjct 924593 GGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCAC 924652
Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-T 46594
| | || || || | ||||||||||||||||| || || || |||||||| ||||| |
Sbjct 924653 TGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGT 924712
Query 46595 TTGC 46598
||||
Sbjct 924713 TTGC 924716
>seq41127
Length=7874669
Score = 107 bits (118), Expect = 2e-18
Identities = 160/223 (72%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
||||||||||| |||| || ||| || ||||| |||||||| || |||||||| |
Sbjct 7357814 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 7357873
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||| ||||| || ||||||| ||| |||||| | || | | |||||||
Sbjct 7357874 TCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCCTTG 7357933
Query 46499 TCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
| ||| ||| | ||| || | | ||||| || | || || || | | |||
Sbjct 7357934 T-GTTGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGGGAT 7357992
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCA 46599
||||||||| || || || || |||||||| ||||| ||||||
Sbjct 7357993 GGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTTTGCA 7358035
>seq43203
Length=1387722
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| |||| || || |||||||| |||||||| || |||||| | | || ||
Sbjct 881602 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGAGGCCATCCTCC 881661
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || ||||||| ||||||||||| | || | | |||||||||
Sbjct 881662 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 881721
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || |||| || | |||| || | || || || | |||||||| |||
Sbjct 881722 ATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTG 881781
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || || ||||||| |||||
Sbjct 881782 CCCGTGAGGGTCTTCACAAAGAGCTGCAT 881810
>seq42510
Length=1301382
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | ||
Sbjct 87139 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87198
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| || |||||||| || || |||| | ||||| || | || | | ||||| ||
Sbjct 87199 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 87258
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | ||| || | ||| || || | ||||||||
Sbjct 87259 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87318
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||| || ||||| || || || |||||||||
Sbjct 87319 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 87355
>seq39797
Length=2305578
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | ||
Sbjct 1757138 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1757079
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| || |||||||| || || |||| | ||||| || | || | | ||||| ||
Sbjct 1757078 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1757019
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | ||| || | ||| || || | ||||||||
Sbjct 1757018 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 1756959
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||| || ||||| || || || |||||||||
Sbjct 1756958 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 1756922
>seq33539
Length=658333
Score = 89.7 bits (98), Expect = 6e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | ||
Sbjct 236610 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 236669
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| || |||||||| || || |||| | ||||| || | || | | ||||| ||
Sbjct 236670 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 236729
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | ||| || | ||| || || | ||||||||
Sbjct 236730 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 236789
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| || || || ||||| || || || |||||||||
Sbjct 236790 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTTG 236826
>seq97443
Length=343
Score = 82.4 bits (90), Expect = 9e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | |||||| | || || || | ||| |||||| ||||||||||| || |
Sbjct 251 CCACCACGTAAACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCC 192
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||| | | | || || |||||||| || || || ||||| || |||||||| | ||
Sbjct 191 AAAGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAGATCAAACGTTGCTGGTCTGGTGGG 132
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543
| | ||||||||| ||||| ||| | | | | || || |||| ||
Sbjct 131 ATCCCTTCCTTGTCCTGTATCTTGGCCTTCACATTATCAATAGTATCAGAGCTC---TCA 75
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| |||||||| || || |||| || || |||||||| |||||
Sbjct 74 ACCTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564280942674240
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