Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq26171 95.1 1e-14 seq6348 86.0 5e-12 seq34521 82.4 6e-11 >seq26171 Length=19309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 15497 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 15556 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || || | | || Sbjct 15557 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 15616 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 15617 TTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 15676 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || || | | |||||| Sbjct 15677 CCCAGCACCTCAGGGTGACCTCATGGTCAG 15706 >seq6348 Length=69671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 69260 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 69201 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || || | | || Sbjct 69200 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 69141 Query 469 TCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 | | | ||| | ||||| ||||| || | || || |||||||| |||||||| | Sbjct 69140 TTTGGTCCTCCCCATCCCA-CTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 69082 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||||| || | || || | | | |||||| Sbjct 69081 GCCCAGCACCTCAGGGTGGCCTCATGGTCAG 69051 >seq34521 Length=11349 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||||| | ||| || | | ||| Sbjct 10363 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTC 10422 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| |||||||||||||| ||||| ||||| ||||| || | | | || Sbjct 10423 CCCACTTCTGGAAAGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGAG 10482 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 | |||||| | ||||| ||||| || | || || |||||||| |||||||| Sbjct 10483 T---TTGCTCCTC-CCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCC 10538 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| || | || || | | | |||||| Sbjct 10539 AGGGCCCAGCACCTCAGGGTGGCCTCATGGTCAG 10572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397090299617472