Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9420 352 3e-92 seq30183 201 1e-46 seq37045 116 4e-21 seq43468 111 2e-19 seq19734 102 9e-17 >seq9420 Length=356144 Score = 352 bits (390), Expect = 3e-92 Identities = 648/938 (69%), Gaps = 20/938 (2%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || || |||||||| Sbjct 52548 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACACCACTCCCATC 52605 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || ||||| || |||||||| || || |||| | ||| ||| Sbjct 52606 CTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTC 52660 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| |||||||| || | ||| | | | || | || || | ||| | | Sbjct 52661 TCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCAT- 52719 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||| || || ||||| | ||| ||| ||||| | | |||||||| || || Sbjct 52720 -GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGC 52778 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || ||||| |||||||| || || | ||||| | || Sbjct 52779 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-TGATAATTAT 52837 Query 18909 AGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | ||||| | || || | || || || || ||||| ||||||| || |||| Sbjct 52838 TTCTCTTACTCTCTACTCCAGT-GGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAA 52896 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||||| |||| ||||| ||||| || || | |||||| |||||||| | ||||||| Sbjct 52897 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCA 52956 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||||||||| ||| || | ||||||||| || ||||| | ||||||||| || |||| Sbjct 52957 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTT 53013 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | |||| ||||| | || | | ||| ||||| |||| || || | |||||| | Sbjct 53014 CCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGT 53073 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||| |||||||| || ||||| ||||| || || | | ||| | ||| Sbjct 53074 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAA 53133 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | || | | |||||| | || | || || | ||||| |||||||| |||| Sbjct 53134 ATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAT 53193 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || || ||||| || || || || || | ||||| | |||||||| ||||| |||| Sbjct 53194 GTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTT 53253 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||||| || ||||| |||||||| ||||| |||||||| |||||||| || Sbjct 53254 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 53313 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446 | | ||||| ||||||| | | || | || | || | | ||| ||| | ||| Sbjct 53314 CCAGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCCCAGTGCCAAATG 53372 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | || || || || | ||||| || ||||| || || || |||||||| Sbjct 53373 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 53432 Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | || | | || || || ||||| Sbjct 53433 TGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470 >seq30183 Length=85853 Score = 201 bits (222), Expect = 1e-46 Identities = 387/564 (69%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || |||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||||||||| ||| || | ||||||||| ||||| || ||||||||| | Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | ||| ||| ||||| || | | | |||||||| || | || || || | Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| | || ||||| | |||||||| || ||||| |||||||| || || | ||| Sbjct 31623 ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 31681 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || ||| | | || | |||||||| || || || || | | | | | || Sbjct 31682 AAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTATG 31739 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || ||||| | |||||| |||| | || || || || || || | |||||| ||| Sbjct 31740 TCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATC 31799 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || | ||| | |||| ||| ||||| ||||||| ||||| ||||||| |||||| Sbjct 31800 TGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 31859 Query 19381 AAAAATGC--TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437 || || || |||| | | | ||||||| | |||| || | | || | | || ||| Sbjct 31860 AAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAG-GCTTCAGGGCTTCCCAG 31916 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | ||| || || || | || ||||| | | |||| |||||| ||||| |||| Sbjct 31917 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 31976 Query 19498 TTATACATGTTCCATATATCACGA 19521 |||||| | ||||| |||||| || Sbjct 31977 TTATACGTTTTCCAAATATCATGA 32000 >seq37045 Length=3135053 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341 Query 19103 CAAC 19106 | || Sbjct 1579342 CTAC 1579345 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 1577071 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 1577128 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 1577129 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 1577188 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 1577189 TCCATAAAGTCAAATGGGTTCTCTAC 1577214 >seq43468 Length=1795776 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 1441962 ACCACTCTTTCCCC 1441949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 1453443 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1453384 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 1453383 ATAAAATCAAAAGGATTTT 1453365 >seq19734 Length=6466590 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || |||| Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | | || Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || |||||||||| ||| || | ||| || || Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 5938510 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 5935838 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 5935779 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 5935778 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 5935719 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 5935718 TTTCTTATACCATA 5935705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561156643903680