Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 352 3e-92
seq30183 201 1e-46
seq37045 116 4e-21
seq43468 111 2e-19
seq19734 102 9e-17
>seq9420
Length=356144
Score = 352 bits (390), Expect = 3e-92
Identities = 648/938 (69%), Gaps = 20/938 (2%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || || ||||||||
Sbjct 52548 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACACCACTCCCATC 52605
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| || ||||| || |||||||| || || |||| | ||| |||
Sbjct 52606 CTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTC 52660
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| |||||||| || | ||| | | | || | || || | ||| | |
Sbjct 52661 TCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCAT- 52719
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|||| || || ||||| | ||| ||| ||||| | | |||||||| || ||
Sbjct 52720 -GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGC 52778
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908
|| ||||| | || || || || ||||| |||||||| || || | ||||| | ||
Sbjct 52779 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-TGATAATTAT 52837
Query 18909 AGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| ||||| | || || | || || || || ||||| ||||||| || ||||
Sbjct 52838 TTCTCTTACTCTCTACTCCAGT-GGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAA 52896
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
||||||| |||| ||||| ||||| || || | |||||| |||||||| | |||||||
Sbjct 52897 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCA 52956
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||||||||| ||| || | ||||||||| || ||||| | ||||||||| || ||||
Sbjct 52957 TCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTT 53013
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147
| |||| ||||| | || | | ||| ||||| |||| || || | |||||| |
Sbjct 53014 CCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGT 53073
Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207
|| |||||||| |||||||| || ||||| ||||| || || | | ||| | |||
Sbjct 53074 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAA 53133
Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267
| | || | | |||||| | || | || || | ||||| |||||||| ||||
Sbjct 53134 ATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAAT 53193
Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327
| || || ||||| || || || || || | ||||| | |||||||| ||||| ||||
Sbjct 53194 GTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTT 53253
Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387
| | ||||| || ||||| |||||||| ||||| |||||||| |||||||| ||
Sbjct 53254 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 53313
Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446
| | ||||| ||||||| | | || | || | || | | ||| ||| | |||
Sbjct 53314 CCAGAACATGGGATATAAAATCTCTCTCCT-TGGGCTTCAGGGATTCCCAGTGCCAAATG 53372
Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506
|| || || | || || || || | ||||| || ||||| || || || ||||||||
Sbjct 53373 TCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATC 53432
Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| ||| |||||| | || | | || || || |||||
Sbjct 53433 TGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq30183
Length=85853
Score = 201 bits (222), Expect = 1e-46
Identities = 387/564 (69%), Gaps = 9/564 (2%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| |||| | ||| |||| ||||| || || || || | |||||| |||||||| |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080
|||||||||||||||| ||| || | ||||||||| ||||| || ||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140
| | ||| ||| ||||| || | | | |||||||| || | || || || |
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCTTTGTTCCCA 31622
Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200
||||| | || ||||| | |||||||| || ||||| |||||||| || || | |||
Sbjct 31623 ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 31681
Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260
|| ||| | | || | |||||||| || || || || | | | | | ||
Sbjct 31682 AAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTATG 31739
Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320
|| ||||| | |||||| |||| | || || || || || || | |||||| |||
Sbjct 31740 TCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAATC 31799
Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380
|| | ||| | |||| ||| ||||| ||||||| ||||| ||||||| ||||||
Sbjct 31800 TGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 31859
Query 19381 AAAAATGC--TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437
|| || || |||| | | | ||||||| | |||| || | | || | | || |||
Sbjct 31860 AAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAG-GCTTCAGGGCTTCCCAG 31916
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
| ||| || || || | || ||||| | | |||| |||||| ||||| ||||
Sbjct 31917 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 31976
Query 19498 TTATACATGTTCCATATATCACGA 19521
|||||| | ||||| |||||| ||
Sbjct 31977 TTATACGTTTTCCAAATATCATGA 32000
>seq37045
Length=3135053
Score = 116 bits (128), Expect = 4e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 19103 CAAC 19106
| ||
Sbjct 1579342 CTAC 1579345
Score = 105 bits (116), Expect = 8e-18
Identities = 112/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || || ||| ||||||||
Sbjct 1577071 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 1577128
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| |||
Sbjct 1577129 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 1577188
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| |||||||| || | |||
Sbjct 1577189 TCCATAAAGTCAAATGGGTTCTCTAC 1577214
>seq43468
Length=1795776
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | || ||||| || ||||| || |||
Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| ||
Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 1441962 ACCACTCTTTCCCC 1441949
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || ||||
Sbjct 1453443 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 1453384
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 1453383 ATAAAATCAAAAGGATTTT 1453365
>seq19734
Length=6466590
Score = 102 bits (112), Expect = 9e-17
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || ||||
Sbjct 5938678 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 5938619
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | |||||| || |||||||| || |||||||| ||||||||||| | | ||
Sbjct 5938618 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 5938559
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || |||||||||| ||| || | ||| || ||
Sbjct 5938558 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGG 5938510
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || || || ||||| || ||
Sbjct 5935838 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 5935779
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | || |||||||| || ||||||||||| | |||| | ||| ||
Sbjct 5935778 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 5935719
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 5935718 TTTCTTATACCATA 5935705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561156643903680
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