Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9420 239 5e-58 seq30183 156 5e-33 seq43468 111 2e-19 seq37045 82.4 9e-11 >seq9420 Length=356144 Score = 239 bits (264), Expect = 5e-58 Identities = 334/468 (71%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||||||||| |||||||| |||||||| || || | |||||| Sbjct 52877 TTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 52936 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| | Sbjct 52937 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATA 52996 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||| | ||||| |||| ||||| |||||| |||| ||| | || | Sbjct 52997 ACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGC 53053 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | | |||||||||||| || ||||| || || Sbjct 53054 TTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 53113 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||| | || || | |||||| | |||||| |||| |||| ||||| ||||| || Sbjct 53114 TTCAGTGGCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAG 53173 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 ||||||||||||||||| || || || || || || || || || ||| | ||||| | Sbjct 53174 GAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCG 53233 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | ||||| || | ||| | || | ||||||||||| ||||| || Sbjct 53234 GGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 53293 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 |||||| |||||||||||| | ||||||| |||||||| ||| || Sbjct 53294 ATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTC 53341 >seq30183 Length=85853 Score = 156 bits (172), Expect = 5e-33 Identities = 317/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || |||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| ||||| ||||||||| ||||||||| | Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353 | | ||| ||| ||||| ||| ||| || | || | | | | || | || Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCC-ATGGGTAACGTCTTTGTTCCC 31621 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || |||| | |||| ||||||| || ||||| || |||||||||| || | Sbjct 31622 AA-TCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCAT 31679 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||||||| | |||||| ||||| | || | || ||||| || | | ||| | Sbjct 31680 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTTA 31737 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||||| || | ||||| |||| | || || ||||| || || | ||| | || Sbjct 31738 TGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTG-TA 31796 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || |||| || | | ||| | | |||||||||| ||||||||||||| ||| Sbjct 31797 ATCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 31856 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||||| |||| ||| |||||||| |||||| ||| Sbjct 31857 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 31898 >seq43468 Length=1795776 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965 Query 37318 CTAC 37321 | || Sbjct 1441964 CCAC 1441961 >seq37045 Length=3135053 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 1577116 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1577174 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 1577175 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 1577208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591313474572480