Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 239 5e-58
seq30183 156 5e-33
seq43468 111 2e-19
seq37045 82.4 9e-11
>seq9420
Length=356144
Score = 239 bits (264), Expect = 5e-58
Identities = 334/468 (71%), Gaps = 3/468 (1%)
Strand=Plus/Plus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | || ||||||||||| |||||||| |||||||| || || | ||||||
Sbjct 52877 TTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 52936
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| |
Sbjct 52937 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATA 52996
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
|||||||||| | ||||| |||| ||||| |||||| |||| ||| | || |
Sbjct 52997 ACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGC 53053
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || |||||| | | |||||||||||| || ||||| || ||
Sbjct 53054 TTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 53113
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||| | || || | |||||| | |||||| |||| |||| ||||| ||||| ||
Sbjct 53114 TTCAGTGGCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAG 53173
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
||||||||||||||||| || || || || || || || || || ||| | ||||| |
Sbjct 53174 GAAACTATACATTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCG 53233
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
||||| | | ||||| || | ||| | || | ||||||||||| ||||| ||
Sbjct 53234 GGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 53293
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630
|||||| |||||||||||| | ||||||| |||||||| ||| ||
Sbjct 53294 ATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTC 53341
>seq30183
Length=85853
Score = 156 bits (172), Expect = 5e-33
Identities = 317/462 (69%), Gaps = 9/462 (2%)
Strand=Plus/Plus
Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235
|| |||| | ||| |||||||| ||||| || || || | |||||| ||||| || |
Sbjct 31443 CAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 31502
Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295
|| ||||| | |||| ||| || | ||| ||||| ||||||||| ||||||||| |
Sbjct 31503 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCAG 31562
Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353
| | ||| ||| ||||| ||| ||| || | || | | | | || | ||
Sbjct 31563 GTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCC-ATGGGTAACGTCTTTGTTCCC 31621
Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413
|| |||| | |||| ||||||| || ||||| || |||||||||| || |
Sbjct 31622 AA-TCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCAT 31679
Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473
| |||||||| | |||||| ||||| | || | || ||||| || | | ||| |
Sbjct 31680 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGATTATTTA 31737
Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533
| ||||| || | ||||| |||| | || || ||||| || || | ||| | ||
Sbjct 31738 TGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTG-TA 31796
Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592
|| |||| || | | ||| | | |||||||||| ||||||||||||| |||
Sbjct 31797 ATCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 31856
Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
||||||||||| |||| ||| |||||||| |||||| |||
Sbjct 31857 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 31898
>seq43468
Length=1795776
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || |
Sbjct 1442084 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 1442025
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 1442024 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 1441965
Query 37318 CTAC 37321
| ||
Sbjct 1441964 CCAC 1441961
>seq37045
Length=3135053
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||||||||
Sbjct 1577116 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1577174
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||| ||
Sbjct 1577175 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 1577208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591313474572480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |