Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 129 5e-25
seq30207 113 4e-20
seq7505 113 4e-20
seq36948 109 4e-19
seq44127 105 5e-18
seq23601 87.8 1e-12
>seq43609
Length=3422226
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||
Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| ||||| |||||||| ||||| || || ||||| | || |
Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| || ||||| || | || ||||| ||||| || ||||| ||
Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1890920
Score = 118 bits (130), Expect = 9e-22
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||||||||||||||| || || || || |||| |||
Sbjct 1886926 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1886867
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| ||
Sbjct 1886866 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1886807
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || |||||||| | |||||||| ||
Sbjct 1886806 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1886759
>seq30207
Length=2109381
Score = 113 bits (124), Expect = 4e-20
Identities = 184/260 (71%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| ||||| || || || || |||||||| |||| || || || | |
Sbjct 658283 ATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 658342
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || | ||||||||||||||||| ||| ||| ||||||| ||
Sbjct 658343 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 658402
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 112258
||| || ||| |||||||| || | ||||| || |||| | | | || || || |
Sbjct 658403 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCACTGGAAA-TATCTGAATTCATTCC 658461
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
|| || |||| ||||| || ||||| || | |||||||||| ||||| ||
Sbjct 658462 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG-GAC 658514
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || ||||| | ||| ||
Sbjct 658515 ACAGCGACGATGCAGTTTAG 658534
>seq7505
Length=927043
Score = 113 bits (124), Expect = 4e-20
Identities = 184/260 (71%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || | |||||||| |||| || || || | |
Sbjct 647928 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 647987
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || | ||||||||||||||||| || |||| ||||||| ||
Sbjct 647988 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTATCCATAATCACCAGATT 648047
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 112258
||| || ||| |||||||| || | |||| | ||| | || | | | || || || |
Sbjct 648048 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATTCC 648106
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
|| ||| |||| ||||| || ||||| || |||||||||||| ||||| ||
Sbjct 648107 TGAG------AGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 648159
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || ||||| | ||| ||
Sbjct 648160 ACAGCGACGATGCAGTTTAG 648179
>seq36948
Length=1024264
Score = 109 bits (120), Expect = 4e-19
Identities = 185/262 (71%), Gaps = 12/262 (5%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCC--CTGCTGAGGACTACGTTTATCCTGTCT 112137
||||||||| || || || || || || |||||||| |||| || || || |
Sbjct 536917 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTCTGCTGAGAACTAAATTAATTCTACCC 536976
Query 112138 CTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 112197
| | ||||| |||||| || || ||||||||||||||||| ||||||| |||||||
Sbjct 536977 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGA 537036
Query 112198 TTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTT 112256
||||| || ||| |||||||| || | |||| | ||| | || | | | || || ||
Sbjct 537037 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT 537095
Query 112257 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGAC 112315
| || || |||| ||||| || ||||| || |||||||||||| |||||
Sbjct 537096 CCTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-G 537148
Query 112316 ACACGGCCACGATACCGTTCAG 112337
|||| || || || | ||| ||
Sbjct 537149 ACACAGCGACCATGCAGTTTAG 537170
>seq44127
Length=2713167
Score = 105 bits (116), Expect = 5e-18
Identities = 180/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || |||||||| |||| || || || || |
Sbjct 202103 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 202162
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| ||
Sbjct 202163 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 202222
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258
||| || ||| |||||||| | | |||| ||| | || | | || || || |
Sbjct 202223 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-CTTCTCTGGAAATACCTGAATTCATTCC 202281
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318
|| ||| |||| ||||| || || || || || |||||||||| | | |||
Sbjct 202282 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 202335
Query 112319 CGGCCACGATACCGTTCAG 112337
| || ||||| | ||| ||
Sbjct 202336 CAGCGACGATGCAGTTTAG 202354
>seq23601
Length=1137639
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218
||| ||||| || |||| |||||||||||| || | || || |||| | | || |||||
Sbjct 135459 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 135401
Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278
| ||| ||| ||| ||||||||||||||| || || ||| | || || || |
Sbjct 135400 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 135342
Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338
|| ||||| || || ||||| | | |||||| || ||| |||||||||| ||
Sbjct 135341 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 135282
Query 30339 CTCCA 30343
|||||
Sbjct 135281 CTCCA 135277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407942746581176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |