Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq43609 129 5e-25 seq30207 113 4e-20 seq7505 113 4e-20 seq36948 109 4e-19 seq44127 105 5e-18 seq23601 87.8 1e-12 >seq43609 Length=3422226 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1890920 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 1886926 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1886867 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 1886866 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1886807 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || |||||||| | |||||||| || Sbjct 1886806 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1886759 >seq30207 Length=2109381 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| ||||| || || || || |||||||| |||| || || || | | Sbjct 658283 ATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 658342 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || | ||||||||||||||||| ||| ||| ||||||| || Sbjct 658343 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 658402 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | ||||| || |||| | | | || || || | Sbjct 658403 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCACTGGAAA-TATCTGAATTCATTCC 658461 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || | |||||||||| ||||| || Sbjct 658462 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG-GAC 658514 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 658515 ACAGCGACGATGCAGTTTAG 658534 >seq7505 Length=927043 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || | |||||||| |||| || || || | | Sbjct 647928 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 647987 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || | ||||||||||||||||| || |||| ||||||| || Sbjct 647988 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTATCCATAATCACCAGATT 648047 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 648048 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATTCC 648106 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || ||| |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 648107 TGAG------AGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 648159 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 648160 ACAGCGACGATGCAGTTTAG 648179 >seq36948 Length=1024264 Score = 109 bits (120), Expect = 4e-19 Identities = 185/262 (71%), Gaps = 12/262 (5%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCC--CTGCTGAGGACTACGTTTATCCTGTCT 112137 ||||||||| || || || || || || |||||||| |||| || || || | Sbjct 536917 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTCTGCTGAGAACTAAATTAATTCTACCC 536976 Query 112138 CTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 112197 | | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| Sbjct 536977 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGA 537036 Query 112198 TTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTT 112256 ||||| || ||| |||||||| || | |||| | ||| | || | | | || || || Sbjct 537037 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT 537095 Query 112257 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGAC 112315 | || || |||| ||||| || ||||| || |||||||||||| ||||| Sbjct 537096 CCTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-G 537148 Query 112316 ACACGGCCACGATACCGTTCAG 112337 |||| || || || | ||| || Sbjct 537149 ACACAGCGACCATGCAGTTTAG 537170 >seq44127 Length=2713167 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 202103 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 202162 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| || Sbjct 202163 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 202222 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| ||| | || | | || || || | Sbjct 202223 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-CTTCTCTGGAAATACCTGAATTCATTCC 202281 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 || ||| |||| ||||| || || || || || |||||||||| | | ||| Sbjct 202282 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 202335 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 202336 CAGCGACGATGCAGTTTAG 202354 >seq23601 Length=1137639 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 ||| ||||| || |||| |||||||||||| || | || || |||| | | || ||||| Sbjct 135459 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 135401 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | ||| ||| ||| ||||||||||||||| || || ||| | || || || | Sbjct 135400 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 135342 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 || ||||| || || ||||| | | |||||| || ||| |||||||||| || Sbjct 135341 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 135282 Query 30339 CTCCA 30343 ||||| Sbjct 135281 CTCCA 135277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407942746581176