Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq83510 107 1e-18
seq38975 102 6e-17
seq112392 98.7 8e-16
seq44056 95.1 9e-15
seq42510 87.8 1e-12
seq39797 87.8 1e-12
seq33539 87.8 1e-12
seq36884 82.4 6e-11
>seq83510
Length=277
Score = 107 bits (118), Expect = 1e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
||||||| ||||| || || ||| |||||| || || ||||| ||||| || | ||
Sbjct 223 AGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 164
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| |||||||| ||||||||||| || || | |||| || |||
Sbjct 163 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGAATACCTTCC 104
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || | ||| ||||| | ||
Sbjct 103 TTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACCTCAAGGGTG 44
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || ||||||| ||||| || || |||||||||
Sbjct 43 ATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATC 5
>seq38975
Length=485
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| |||||||| |||||||| || || ||| |||| ||||||||||| || |||||
Sbjct 337 TCCTTTTGAATGTTGTAATCCGAAAGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAG 278
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| ||| ||||| || | || | |||||||| || ||||| || || |
Sbjct 277 ATCAATCGTTGTTGGTCGGGTGGGATACCCTCCTTATCTTGGATCTTCGCCTTAACGTTA 218
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | || ||||| | || || || | ||||| || ||||| |||||||| || ||
Sbjct 217 TCAATAGTATCTGATGATTCTACTTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 158
Query 48756 AAAATCTGCAT 48766
|||||||||||
Sbjct 157 AAAATCTGCAT 147
>seq112392
Length=498
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || |||||||| || || | | | | || | || |||| |||
Sbjct 145 TGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCCAAAGTACGGCCATCCTCCAGCTGT 204
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| |||| |||||||| || | ||| | ||||||||||| |||||||
Sbjct 205 TTTCCAGCAAAGATCAACCGCTGTTGGTCAGGGGGGATCCCCTCCTTGTCCTGAATCTTT 264
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | | || || ||| ||||||| || || || || || |||
Sbjct 265 GCTTTCACATTATCAATGGTATCCGAACTCTCAACCTCCAGGGTGATGGTCTTCCCAGTC 324
Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767
|| || || |||||||||||||||
Sbjct 325 AAGGTCTTAACAAAAATCTGCATC 348
>seq44056
Length=626226
Score = 95.1 bits (104), Expect = 9e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||| || || ||| |||||| || || ||||| || || ||| | ||
Sbjct 244796 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGG 244855
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| || |||||||||||||| ||||| || || | || | ||||||
Sbjct 244856 CCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCC 244915
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726
||||| ||| ||| | ||| | | || | | | || | ||| ||||| | |
Sbjct 244916 TTGTCTTGAAT-TTTGGCTTTGACGTTCTCA-ATGGTGTCACTGGGCTCGACCTCAAGGG 244973
Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| || ||||| ||||| || |||||||| ||||||||
Sbjct 244974 TGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 245013
>seq42510
Length=1301382
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||||||||| ||||| | | | || | ||
Sbjct 87139 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87198
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| ||
Sbjct 87199 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 87258
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | | || || | || ||||| | || || ||
Sbjct 87259 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87318
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| | ||||| || |||||||||||
Sbjct 87319 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 87351
>seq39797
Length=2305578
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||||||||| ||||| | | | || | ||
Sbjct 1757138 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1757079
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| ||
Sbjct 1757078 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1757019
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | | || || | || ||||| | || || ||
Sbjct 1757018 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 1756959
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| | ||||| || |||||||||||
Sbjct 1756958 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1756926
>seq33539
Length=658333
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||||||||| ||||| | | | || | ||
Sbjct 236610 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 236669
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| ||
Sbjct 236670 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 236729
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | | ||||| | || ||||| | || || ||
Sbjct 236730 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 236789
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || | ||||| || |||||||||||
Sbjct 236790 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 236822
>seq36884
Length=899181
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| ||||| || || |||||||||||||||||| ||||| | | | || | ||
Sbjct 628426 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 628485
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||| | | |||| || ||||| |
Sbjct 628486 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAAC 628545
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| | |||| | | | ||||| | || ||||| | || || ||
Sbjct 628546 CTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAACCTCGAGGGTGATGGT 628605
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || | ||| | || |||||||||||
Sbjct 628606 CTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 628638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380308461554376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |