Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq83510 107 1e-18 seq38975 102 6e-17 seq112392 98.7 8e-16 seq44056 95.1 9e-15 seq42510 87.8 1e-12 seq39797 87.8 1e-12 seq33539 87.8 1e-12 seq36884 82.4 6e-11 >seq83510 Length=277 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| ||||| || || ||| |||||| || || ||||| ||||| || | || Sbjct 223 AGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 164 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| ||||||||||| || || | |||| || ||| Sbjct 163 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGAATACCTTCC 104 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || | ||| ||||| | || Sbjct 103 TTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACCTCAAGGGTG 44 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||| ||||| || || ||||||||| Sbjct 43 ATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATC 5 >seq38975 Length=485 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| |||||||| || || ||| |||| ||||||||||| || ||||| Sbjct 337 TCCTTTTGAATGTTGTAATCCGAAAGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAG 278 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||| ||||| || | || | |||||||| || ||||| || || | Sbjct 277 ATCAATCGTTGTTGGTCGGGTGGGATACCCTCCTTATCTTGGATCTTCGCCTTAACGTTA 218 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| | || || || | ||||| || ||||| |||||||| || || Sbjct 217 TCAATAGTATCTGATGATTCTACTTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 158 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 157 AAAATCTGCAT 147 >seq112392 Length=498 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || |||||||| || || | | | | || | || |||| ||| Sbjct 145 TGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCCAAAGTACGGCCATCCTCCAGCTGT 204 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| |||||||| || | ||| | ||||||||||| ||||||| Sbjct 205 TTTCCAGCAAAGATCAACCGCTGTTGGTCAGGGGGGATCCCCTCCTTGTCCTGAATCTTT 264 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || || ||| ||||||| || || || || || ||| Sbjct 265 GCTTTCACATTATCAATGGTATCCGAACTCTCAACCTCCAGGGTGATGGTCTTCCCAGTC 324 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||||||||||| Sbjct 325 AAGGTCTTAACAAAAATCTGCATC 348 >seq44056 Length=626226 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| || || ||| |||||| || || ||||| || || ||| | || Sbjct 244796 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGCGG 244855 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || |||||||||||||| ||||| || || | || | |||||| Sbjct 244856 CCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCC 244915 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCG 48726 ||||| ||| ||| | ||| | | || | | | || | ||| ||||| | | Sbjct 244916 TTGTCTTGAAT-TTTGGCTTTGACGTTCTCA-ATGGTGTCACTGGGCTCGACCTCAAGGG 244973 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| ||||| || |||||||| |||||||| Sbjct 244974 TGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 245013 >seq42510 Length=1301382 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 87139 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87198 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 87199 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 87258 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 87259 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87318 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 87319 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 87351 >seq39797 Length=2305578 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 1757138 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1757079 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 1757078 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1757019 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 1757018 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 1756959 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 1756958 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1756926 >seq33539 Length=658333 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 236610 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 236669 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 236670 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 236729 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | ||||| | || ||||| | || || || Sbjct 236730 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 236789 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||||| || ||||||||||| Sbjct 236790 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 236822 >seq36884 Length=899181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| ||||| || || |||||||||||||||||| ||||| | | | || | || Sbjct 628426 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 628485 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||| | | |||| || ||||| | Sbjct 628486 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAAC 628545 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| | |||| | | | ||||| | || ||||| | || || || Sbjct 628546 CTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAACCTCGAGGGTGATGGT 628605 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || | ||| | || ||||||||||| Sbjct 628606 CTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 628638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380308461554376