Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq10657 192 1e-43
seq41782 141 2e-28
seq9420 129 1e-24
seq19734 93.3 8e-14
seq18121 89.7 1e-12
>seq10657
Length=6217487
Score = 192 bits (212), Expect = 1e-43
Identities = 193/247 (78%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442
||| |||||||||| | || ||||| | || ||||| ||||||||| ||||||||||
Sbjct 5008244 AGCAGCTGACAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 5008301
Query 241443 GGTCCCGCAGAACGGAC--GCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTT 241500
| ||||| || | ||| |||||| | ||||| || ||||| || | ||||||| |||
Sbjct 5008302 GCTCCCGGAGGA--GACCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTT 5008359
Query 241501 CACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGC 241560
||| || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||
Sbjct 5008360 CACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGC 5008419
Query 241561 CAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGAT 241620
|| |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| |||
Sbjct 5008420 CAGCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGAT 5008479
Query 241621 CGGAGAC 241627
|| |||
Sbjct 5008480 GGGGGAC 5008486
Score = 87.8 bits (96), Expect = 3e-12
Identities = 90/117 (77%), Gaps = 12/117 (10%)
Strand=Plus/Plus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGAC--GCGGTATTGGACAGACCCGC 238983
|||||||||| ||||||||| | ||||| || | ||| |||||| | ||||| |||||
Sbjct 5008281 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGA--GACCGGCGGTACTCGACAGCCCCGC 5008338
Query 238984 GTTATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
||| || | ||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 5008339 GTTCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 5008395
>seq41782
Length=1942666
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 324921 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 324980
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||| || |||||||||||||||||| |||| |||||| |||||
Sbjct 324981 TCCGTGTTCTGGCTCTTAAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 325040
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||||
Sbjct 325041 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 325100
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 325101 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 325133
>seq9420
Length=356144
Score = 129 bits (142), Expect = 1e-24
Identities = 544/847 (64%), Gaps = 33/847 (4%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || |||| ||||| |||||||||||||| ||||| | | || || |||||
Sbjct 52608 CTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTC 52662
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956
||| ||| || ||||| | | | | | | || || ||| |||| ||||||||
Sbjct 52663 CATAAAGTCAAATGGGTTC--TCTACTCTGAAAACCTTGCTCAAACCCA---GTTCCAGC 52717
Query 47957 AGGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| || || || || |||| ||||||| ||| || ||| ||||| || || |
Sbjct 52718 ATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 52777
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
||| ||||| |||| ||||| || |||| |||||| | || || | | ||
Sbjct 52778 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 52837
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
| | || | |||| ||||||| |||||| ||| | | || ||| ||
Sbjct 52838 TTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGA---ACATCAGGCAAGC 52894
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
||| || | ||| || || || || | ||| || || | ||||| || ||| |||||
Sbjct 52895 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 52954
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| | || | | ||||||||||| || | || ||| | |||| | ||||||||
Sbjct 52955 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG---AAAAGATGCC 53011
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
||| |||| || || | | | || || | | ||| | ||||| |||||
Sbjct 53012 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 53071
Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
| | ||| ||||| |||||||||||||||| || |||||||| || |||| || ||
Sbjct 53072 GTGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGA 53130
Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAAC--ATAGGT-AGTG---AGCAGCTTTGCGTACA 48428
| | || | | | | | | | || || |||| | || ||||
Sbjct 53131 G------AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 53184
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
| ||||| || | |||||||| || || ||||| || |||| | ||| || ||
Sbjct 53185 TTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 53244
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||| |||||| | |||| ||||| || || ||||| ||||| ||||| || |
Sbjct 53245 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 53304
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608
||||||| | || ||||| | |||| | ||| ||| | | || | | ||||
Sbjct 53305 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGT 53364
Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668
| | ||| ||| ||||||||| || || | ||||||||||| || || || |
Sbjct 53365 GCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCT 53424
Query 48669 TGTACAT 48675
| |||||
Sbjct 53425 TATACAT 53431
>seq19734
Length=6466590
Score = 93.3 bits (102), Expect = 8e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 5926310 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 5926251
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641
||| || || | || ||||| ||||||||||| || |||| || || |||
Sbjct 5926250 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCT 5926197
>seq18121
Length=4245272
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 3158559 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTTCTTTTTCGGCACTTGGAGGCA 3158618
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| |||||||||
Sbjct 3158619 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 3158678
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 3158679 ATGGGGGAC 3158687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929954876590080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |