Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10657 192 1e-43 seq41782 141 2e-28 seq9420 129 1e-24 seq19734 93.3 8e-14 seq18121 89.7 1e-12 >seq10657 Length=6217487 Score = 192 bits (212), Expect = 1e-43 Identities = 193/247 (78%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||||||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 5008244 AGCAGCTGACAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 5008301 Query 241443 GGTCCCGCAGAACGGAC--GCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTT 241500 | ||||| || | ||| |||||| | ||||| || ||||| || | ||||||| ||| Sbjct 5008302 GCTCCCGGAGGA--GACCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTT 5008359 Query 241501 CACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGC 241560 ||| || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| || Sbjct 5008360 CACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGC 5008419 Query 241561 CAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGAT 241620 || |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| Sbjct 5008420 CAGCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGAT 5008479 Query 241621 CGGAGAC 241627 || ||| Sbjct 5008480 GGGGGAC 5008486 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 12/117 (10%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGAC--GCGGTATTGGACAGACCCGC 238983 |||||||||| ||||||||| | ||||| || | ||| |||||| | ||||| ||||| Sbjct 5008281 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGA--GACCGGCGGTACTCGACAGCCCCGC 5008338 Query 238984 GTTATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 ||| || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 5008339 GTTCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 5008395 >seq41782 Length=1942666 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 324921 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 324980 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||| || |||||||||||||||||| |||| |||||| ||||| Sbjct 324981 TCCGTGTTCTGGCTCTTAAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 325040 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 325041 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 325100 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 325101 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 325133 >seq9420 Length=356144 Score = 129 bits (142), Expect = 1e-24 Identities = 544/847 (64%), Gaps = 33/847 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || |||| ||||| |||||||||||||| ||||| | | || || ||||| Sbjct 52608 CTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTC 52662 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || ||||| | | | | | | || || ||| |||| |||||||| Sbjct 52663 CATAAAGTCAAATGGGTTC--TCTACTCTGAAAACCTTGCTCAAACCCA---GTTCCAGC 52717 Query 47957 AGGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || || |||| ||||||| ||| || ||| ||||| || || | Sbjct 52718 ATGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 52777 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| |||| ||||| || |||| |||||| | || || | | || Sbjct 52778 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 52837 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | | || | |||| ||||||| |||||| ||| | | || ||| || Sbjct 52838 TTCTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGA---ACATCAGGCAAGC 52894 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||| || | ||| || || || || | ||| || || | ||||| || ||| ||||| Sbjct 52895 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 52954 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | | ||||||||||| || | || ||| | |||| | |||||||| Sbjct 52955 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG---AAAAGATGCC 53011 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| |||| || || | | | || || | | ||| | ||||| ||||| Sbjct 53012 TTCCGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCA 53071 Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| ||||| |||||||||||||||| || |||||||| || |||| || || Sbjct 53072 GTGCAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGA 53130 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAAC--ATAGGT-AGTG---AGCAGCTTTGCGTACA 48428 | | || | | | | | | | || || |||| | || |||| Sbjct 53131 G------AAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 53184 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | ||||| || | |||||||| || || ||||| || |||| | ||| || || Sbjct 53185 TTTCAGAATGTATGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 53244 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| |||||| | |||| ||||| || || ||||| ||||| ||||| || | Sbjct 53245 TCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTG 53304 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 ||||||| | || ||||| | |||| | ||| ||| | | || | | |||| Sbjct 53305 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGT 53364 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | ||| ||| ||||||||| || || | ||||||||||| || || || | Sbjct 53365 GCCAAATGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCT 53424 Query 48669 TGTACAT 48675 | ||||| Sbjct 53425 TATACAT 53431 >seq19734 Length=6466590 Score = 93.3 bits (102), Expect = 8e-14 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 5926310 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 5926251 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 ||| || || | || ||||| ||||||||||| || |||| || || ||| Sbjct 5926250 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCT 5926197 >seq18121 Length=4245272 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 3158559 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTTCTTTTTCGGCACTTGGAGGCA 3158618 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 3158619 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 3158678 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 3158679 ATGGGGGAC 3158687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929954876590080