Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9420 134 3e-26 seq37045 93.3 8e-14 >seq9420 Length=356144 Score = 134 bits (148), Expect = 3e-26 Identities = 396/598 (66%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| || || |||||||||||| ||| | || Sbjct 53443 GATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGAC 53384 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| |||||||||| |||| | | || | || ||| ||| || ||||| | Sbjct 53383 CTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCAAGGAGAG-AG-ATTTTATAT 53326 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || ||| ||||||||||| |||||| ||||| || || || || ||| Sbjct 53325 CCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGC 53266 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 |||| | | ||||| ||| || ||| ||||||| || ||||| || |||| Sbjct 53265 GATTTAGCCAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCA 53206 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTC--TGATGACG--TACATTACAGAC 25767 | || || | || ||||| ||||| || ||| | |||| ||||| | ||| Sbjct 53205 TAGAGAACATACATTCTGAAATGTAT----AGTTTCCTTATTGACACTTACATAAAAGAT 53150 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 | || || || || | ||||| || || || | |||||| |||| Sbjct 53149 CCCAAAGAAAGGGAATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAG 53090 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGT 25886 || |||||| || | ||||| | || || ||||| | ||| || || | || Sbjct 53089 GCAGATTGGGCCTTGCACTGGATTGGG-GACAAAGAAGCTACCTATGGTGAACGTGTTGT 53031 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||||||| | ||| |||||||||| |||| ||||| | || |||||||| Sbjct 53030 AGTCTTTGCTGCAGCGGAAGGCATCTTTTCT---GGTTATTTTGCATCGATATTCTGGCT 52974 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 |||| | | | |||| ||||| || || |||||||| || || || ||||| || | Sbjct 52973 CAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATG 52915 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||||| | ||| | |||||||| |||||| | | || ||| || | |||||||| Sbjct 52914 AGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCA---AACACCTGGTACACAAACC 52860 >seq37045 Length=3135053 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || |||||| ||||| | || |||||| Sbjct 1579345 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 1579286 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || |||||||| || Sbjct 1579285 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 1579227 Query 26004 CGAGG 26008 |||| Sbjct 1579226 TGAGG 1579222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927271429793280