Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq42477 311 1e-79
seq9262 188 8e-43
seq30277 93.3 5e-14
>seq42477
Length=2619879
Score = 311 bits (344), Expect = 1e-79
Identities = 664/987 (67%), Gaps = 15/987 (2%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|| ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| ||
Sbjct 692681 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 692740
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| ||| | || ||||||| || ||| || | || || | ||| ||
Sbjct 692741 AAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 692797
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | ||| || || | ||| || ||||| | || || || | || ||||| ||
Sbjct 692798 CGAGCGCACGTGGACCCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 692857
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||| |||||||| ||||||||||| | || |||||||| || ||||| || |
Sbjct 692858 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 692917
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | || || || | || || | ||| | ||||||||| || | ||
Sbjct 692918 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 692977
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| ||||| | | ||| ||||| |||| | || | | | | ||
Sbjct 692978 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTCATTCTGTAG 693037
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || ||| | || |||||||| || ||||| || || | ||| |
Sbjct 693038 TACATACCCCACATACTCTCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 693097
Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528
| | ||| || | |||| | || ||||| | || | ||| || | |
Sbjct 693098 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAATGAC 693154
Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588
| | | ||||| |||||||| | || || | |||||| | ||||| || || ||
Sbjct 693155 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 693214
Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648
||| | || | | | ||||||| | |||| || |||||||| || || | |||||
Sbjct 693215 GTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 693274
Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708
|| |||| || | ||||||| ||||||||| || || |||| | | |||||| |
Sbjct 693275 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 693334
Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768
|||||| |||| || ||||| || |||||||| || || || || || |||| | |
Sbjct 693335 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAATCG 693394
Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA 160825
|||||||||||||| ||| |||||| || |||| || ||| | || | | || |
Sbjct 693395 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTAAATAGGA 693454
Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885
||| || | ||| |||||| || | |||||| | ||||||||| ||||||||
Sbjct 693455 -ATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGC 693511
Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945
||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| ||
Sbjct 693512 CCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGG 693571
Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005
|||||| | ||| || ||| |||| | | || || || ||||||| ||| |
Sbjct 693572 AAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGA 693631
Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032
| ||| || | |||||||| |||||
Sbjct 693632 AGTACAGTCACTGGTCATGTTTATATA 693658
>seq9262
Length=4723420
Score = 188 bits (208), Expect = 8e-43
Identities = 227/309 (73%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 168155 AGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAA 168214
||| | ||| | | |||| || ||||| || || || || || |||||||| |||||| |
Sbjct 1893367 AGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACACATGTA 1893426
Query 168215 GCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAA 168274
|| ||||| ||||||| |||| ||||||| || || | ||||||||| |||| ||||
Sbjct 1893427 ACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAG 1893486
Query 168275 CTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCT 168334
||| || ||||| | || ||||| | ||| || | || || || |||||||||||
Sbjct 1893487 CTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCT 1893546
Query 168335 GAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAAC 168394
||||||| ||||||| || ||||| || || | |||||||| || || ||||| ||
Sbjct 1893547 GAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATCAGGAC 1893606
Query 168395 CTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTC 168454
|| | | | ||||| || ||||| | ||||| ||||||| |||| | |||| ||
Sbjct 1893607 TTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTCTCTTTC 1893666
Query 168455 ATCTTGAGT 168463
||| || ||
Sbjct 1893667 ATCCTGGGT 1893675
Score = 93.3 bits (102), Expect = 5e-14
Identities = 153/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942
||||||| | ||| || ||||| |||| || || |||| ||| |||||||| ||
Sbjct 1890817 GTTTGCCTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 1890873
Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002
|| || ||| |||| || ||||| || || | ||||| || ||| || || |||||
Sbjct 1890874 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 1890933
Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062
| || | | || || || || ||||||||||| | | ||||||||||| ||
Sbjct 1890934 GGGTGAGACAGCGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGATC 1890993
Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| || || || || || || |||||||| || || ||||
Sbjct 1890994 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1891033
>seq30277
Length=7153799
Score = 93.3 bits (102), Expect = 5e-14
Identities = 196/290 (68%), Gaps = 7/290 (2%)
Strand=Plus/Plus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || ||||| || || ||| || || |||||||||| ||| || |
Sbjct 3729660 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 3729716
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | || |||| | || ||| | || |||||| || |||| || ||
Sbjct 3729717 CCCATAAACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGGCCATAAGGAGCACCCTT 3729776
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
| | ||| || || | | ||||||||| || | |||||| || | |||||| ||
Sbjct 3729777 ATCGATGTCTCCCTCATGGCCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 3729836
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334
| ||||||| ||| |||||| | || || | | ||| ||| ||||| |||
Sbjct 3729837 GATGTCGTACTTGGGGTGATTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 3729894
Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384
|||||||| |||||||| || ||||| || ||||| || |||||| ||
Sbjct 3729895 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 3729944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576241448397120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |