Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq42477 311 1e-79 seq9262 188 8e-43 seq30277 93.3 5e-14 >seq42477 Length=2619879 Score = 311 bits (344), Expect = 1e-79 Identities = 664/987 (67%), Gaps = 15/987 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 692681 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 692740 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||||| || ||| || | || || | ||| || Sbjct 692741 AAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 692797 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 692798 CGAGCGCACGTGGACCCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 692857 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 692858 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 692917 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 692918 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 692977 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| | || | | | | || Sbjct 692978 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTCATTCTGTAG 693037 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || ||| | || |||||||| || ||||| || || | ||| | Sbjct 693038 TACATACCCCACATACTCTCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 693097 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || | | Sbjct 693098 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAATGAC 693154 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 693155 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 693214 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | ||||||| | |||| || |||||||| || || | ||||| Sbjct 693215 GTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 693274 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 693275 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 693334 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || |||||||| || || || || || |||| | | Sbjct 693335 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAATCG 693394 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA 160825 |||||||||||||| ||| |||||| || |||| || ||| | || | | || | Sbjct 693395 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTAAATAGGA 693454 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 ||| || | ||| |||||| || | |||||| | ||||||||| |||||||| Sbjct 693455 -ATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGC 693511 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| || Sbjct 693512 CCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGG 693571 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | ||| || ||| |||| | | || || || ||||||| ||| | Sbjct 693572 AAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGA 693631 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 | ||| || | |||||||| ||||| Sbjct 693632 AGTACAGTCACTGGTCATGTTTATATA 693658 >seq9262 Length=4723420 Score = 188 bits (208), Expect = 8e-43 Identities = 227/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 168155 AGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAA 168214 ||| | ||| | | |||| || ||||| || || || || || |||||||| |||||| | Sbjct 1893367 AGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACACATGTA 1893426 Query 168215 GCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAA 168274 || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| |||| Sbjct 1893427 ACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAG 1893486 Query 168275 CTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCT 168334 ||| || ||||| | || ||||| | ||| || | || || || ||||||||||| Sbjct 1893487 CTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCT 1893546 Query 168335 GAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAAC 168394 ||||||| ||||||| || ||||| || || | |||||||| || || ||||| || Sbjct 1893547 GAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATCAGGAC 1893606 Query 168395 CTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTC 168454 || | | | ||||| || ||||| | ||||| ||||||| |||| | |||| || Sbjct 1893607 TTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTCTCTTTC 1893666 Query 168455 ATCTTGAGT 168463 ||| || || Sbjct 1893667 ATCCTGGGT 1893675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 1890817 GTTTGCCTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 1890873 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| || || ||||| Sbjct 1890874 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 1890933 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| || Sbjct 1890934 GGGTGAGACAGCGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGATC 1890993 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || || |||| Sbjct 1890994 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1891033 >seq30277 Length=7153799 Score = 93.3 bits (102), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 3729660 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 3729716 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || |||| | || ||| | || |||||| || |||| || || Sbjct 3729717 CCCATAAACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGGCCATAAGGAGCACCCTT 3729776 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 3729777 ATCGATGTCTCCCTCATGGCCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 3729836 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 3729837 GATGTCGTACTTGGGGTGATTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 3729894 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 3729895 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 3729944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576241448397120