Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq33539 122 2e-22 seq42510 116 7e-21 seq39797 116 7e-21 seq44074 107 3e-18 seq83510 102 1e-16 seq40450 102 1e-16 seq17706 100 5e-16 seq112392 98.7 2e-15 seq21918 93.3 8e-14 seq43693 91.5 3e-13 seq69637 87.8 3e-12 seq18191 86.0 1e-11 seq26904 84.2 4e-11 >seq33539 Length=658333 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 236614 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 236673 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 236674 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 236733 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 236734 ATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 236793 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || ||||| || || || |||||||| Sbjct 236794 CCTGTAAGGGTTTTCACGAAAATCTGCATTTT 236825 >seq42510 Length=1301382 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 87143 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 87202 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 87203 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 87262 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 87263 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 87322 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 87323 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 87354 >seq39797 Length=2305578 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 1757134 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 1757075 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 1757074 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 1757015 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||| || || || || || || Sbjct 1757014 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 1756955 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| || || || |||||||| Sbjct 1756954 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1756923 >seq44074 Length=2336235 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || |||||| || || || || || ||| || | | Sbjct 1652747 AGATGAAGAGTAGACTCCTTTTGAATATTGTACTCAGACAAAGTATGTCCATCTTCCAGT 1652806 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 1652807 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 1652866 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| || ||||| || ||||| || ||||| || || || || Sbjct 1652867 TTGGCCTTTACATTTTCTATCGTATCTGAGAGTTCAACCTCGAGAGTGATGGTCTTCCCC 1652926 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || || |||||||| Sbjct 1652927 GTAAGGGTTTTCACGAAAATCTGCATTTT 1652955 >seq83510 Length=277 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || || ||||| || | || | |||||| || || ||||| || Sbjct 233 ACCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 174 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| || | || || |||||||| || | || ||| || |||||||| Sbjct 173 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGG 114 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || || | || | |||| |||||||||||||| ||| || Sbjct 113 AATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGAC 54 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || ||||| || || || ||||| || Sbjct 53 CTCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3 >seq40450 Length=975263 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || ||| || |||| || || || | ||| || | | Sbjct 15911 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGT 15970 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || | || ||||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 15971 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 16030 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| ||||| || | ||||| || || || ||||| || || Sbjct 16031 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCC 16090 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| ||||| ||||| || |||||||| Sbjct 16091 CTTAGGGTTTTCACAAAAATCTGCATTTT 16119 >seq17706 Length=950375 Score = 100 bits (110), Expect = 5e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | | | || Sbjct 545088 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCACCTTCC 545147 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 545148 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 545207 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || |||| || | ||||| || || || || || || Sbjct 545208 ATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 545267 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || | || ||||| || || || |||||||| Sbjct 545268 CCCATAAGAGTTTTCACGAA-ATCTGCATTTT 545298 >seq112392 Length=498 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | | ||||| || || || | || | ||| || ||||||||| Sbjct 114 TTACAAACCACCGCGGAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTATA 173 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||||| || || | ||| || | |||||||| ||||| || || | |||||| || Sbjct 174 GTCGGCCAAAGTACGGCCATCCTCCAGCTGTTTTCCAGCAAAGATCAACCGCTGTTGGTC 233 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||| || || || || || || || || || | ||| | ||| ||| ||||| ||| Sbjct 234 AGGGGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTATCCGAACT 293 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || || | || || ||||| || ||||| Sbjct 294 CTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAAATCTGCAT 347 >seq21918 Length=9848887 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || ||||| ||||| || | |||||| || || ||||| Sbjct 7768890 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 7768949 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||||||||| || | ||||| || |||||| Sbjct 7768950 GACAGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 7769009 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | || | ||| ||| || || | |||| Sbjct 7769010 GGGATGCCCTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 7769069 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || || || || || || |||||| Sbjct 7769070 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 7769120 >seq43693 Length=2839110 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || ||||| || | ||| || ||||||||||| | |||||| || Sbjct 374694 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAACTCCTTCCTT 374635 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| | |||| | | ||||| || || || || Sbjct 374634 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGAT 374575 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || ||||| || ||||| || || || ||||||| Sbjct 374574 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 374537 >seq69637 Length=240 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || ||||| || || | | ||| || ||||| || ||||||||||| ||||| ||| Sbjct 215 TGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATTCCTTCTTTGTCTTGGATT 156 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | |||| || || || |||| || || || || || || || ||||| Sbjct 155 TTGGCCTTCACATTTTCGATTGTGTCTGAAGGTTCGACCTCAAGTGTGATGGTCTTACCA 96 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 95 GTCAGGGTCTTGACAAAGATTTGCAT 70 >seq18191 Length=3674030 Score = 86.0 bits (94), Expect = 1e-11 Identities = 287/420 (68%), Gaps = 45/420 (11%) Strand=Plus/Plus Query 39975 ttattttgta-atatttatgattatatt-tataaaaat-tcaataattatattatatatt 40031 |||| | ||| |||||||| || ||||| |||||| || | ||| ||||||||||| Sbjct 3039250 TTATATAGTATATATTTAT-ATGATATTATATAAATATATAAATTTATATATTATATAAA 3039308 Query 40032 tacatcgt-----tatattGCCTTTA-ACATCATAAAAA----ATAACATGGatat-tat 40080 || ||| | |||||| | | | |||||| ||| ||||||| ||| ||| Sbjct 3039309 TATATCATATAAATATATTATATAAATATATCATATAAATATTATAACATAT-TATATAT 3039367 Query 40081 tgatatttatata-aatttttcattttttaaatta-catataataatataatttccataa 40138 | |||| ||||| ||| | | ||| ||| || | ||||||| | |||| | | ||| Sbjct 3039368 TTATATAAATATATAATATATGATTGATTATATAATCATATAACA-TATAGTATTTATAT 3039426 Query 40139 atataatgacaaatacattattatatataaaatggaaatatataaaatttctagaaaaaa 40198 ||| || || ||| || |||||||||| ||| || |||||| || | ||| | | || Sbjct 3039427 ATAATATTCCACATA--TTGTTATATATAATATGTAATTATATATAAGTACTACACACAA 3039484 Query 40199 ttaaaccaaaaaatataaataaatGCATAGCCATAGTATATGATAGAAAATGCAATGAAT 40258 || | | | | |||| ||||| ||| || ||||| ||| | | | || ||| Sbjct 3039485 ATACATTATATATTATA--TAAAT--ATA----TAATATATAATATACACAGATAT-AAT 3039535 Query 40259 TAACAAAATATAA-ATATTGTTATAATCATTATAAAATAATGAAAGAGTATTGTAATTTA 40317 | || |||| | |||| ||||||| || |||| ||||| | | |||| || ||| Sbjct 3039536 ATATAATATATTATATATAATTATAATTAT-ATAATATAATATATTA-TATTATA--TTA 3039591 Query 40318 TATCATTATTGGAATAATAGATATAAATATCAAGATGTAGAATTATATAATTTAATAGAT 40377 ||| ||||| ||||| |||||| ||| | || ||||||||||| ||||| || Sbjct 3039592 TATAATTAT----ATAATT-ATATAA-TATAATTAT----AATTATATAATATAATATAT 3039641 >seq26904 Length=301527 Score = 84.2 bits (92), Expect = 4e-11 Identities = 301/448 (67%), Gaps = 56/448 (13%) Strand=Plus/Plus Query 46775 atatatattata-ataaactgtattatttg-actatttttaataatatatgttatggtat 46832 |||||||||||| ||| | | |||||| | | ||| |||| || ||||| |||| ||| Sbjct 85997 ATATATATTATATATATATTATATTATATATATTATATTTATTA-TATATATTATATTAT 86055 Query 46833 atatgta----atttACGATATTTGGAAATTTTAATATGTTTACTGATATGATATTTAAT 46888 |||| || ||||| |||| | ||| || ||| | || | |||| |||| || | Sbjct 86056 ATATATATTATATTTATTATATAT----ATTATATTATATATATT-ATATTATATATATT 86110 Query 46889 AATTGGATAAACTGTATAAAATTAAGAGACATATGTATTATTTTATCTATAATAACTATT 46948 | | || | | ||| | ||| | |||| ||| ||| ||| ||| ||| |||| Sbjct 86111 ATATTTATTATATATATTATATTTATT---ATATATAT-ATTATATTTATTATATATATT 86166 Query 46949 ATATTTAATTGTGCATTAACAGTATTAGAATtatactcattcatatatttaaaacata-t 47007 |||||| ||| | || |||| |||||| || |||||||| | ||| | Sbjct 86167 ATATTT-ATTATATAT-----ATATT--TATTATATATAT---TATATTTATTATATATT 86215 Query 47008 acatatatcaaatatagcactatgtataataaataCTTCGttacttttaattaatatatt 47067 | |||||| | ||||| | ||| ||| ||| ||| | || || | || ||||||| Sbjct 86216 ATATATATTATATATATTA-TATTTATTATATATATT---ATATTTATTATATATATATT 86271 Query 47068 -tataaatttattattaatgtatgctatatacttaaatattagaattatagtaaaa---a 47123 |||| ||||||||| || ||| |||||| || ||| | ||||| ||||| | Sbjct 86272 ATATATATTTATTAT--ATTTATCATATATA--TA---TTTATATTTATA-TAAAATATA 86323 Query 47124 tatttataatactatatattattagcatcgcgttgtatatattatta-actaatattaaa 47182 |||||||| | |||||| ||||| | ||||||| | || | | ||||| | Sbjct 86324 TATTTATATTTATATATA-TATTA---------TATATATATAAATATATTTATATTTAT 86373 Query 47183 atatat-tcgtatGGTTTTATATCATAT 47209 |||||| | ||| ||||||| |||| Sbjct 86374 ATATATAACATATTTATTTATATTATAT 86401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898130475411840