Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq33539 122 2e-22
seq42510 116 7e-21
seq39797 116 7e-21
seq44074 107 3e-18
seq83510 102 1e-16
seq40450 102 1e-16
seq17706 100 5e-16
seq112392 98.7 2e-15
seq21918 93.3 8e-14
seq43693 91.5 3e-13
seq69637 87.8 3e-12
seq18191 86.0 1e-11
seq26904 84.2 4e-11
>seq33539
Length=658333
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || |||||| ||||| || || || | ||| ||
Sbjct 236614 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 236673
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 236674 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 236733
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | ||||| || || || || || ||
Sbjct 236734 ATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGTCTTC 236793
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| || ||||| || || || ||||||||
Sbjct 236794 CCTGTAAGGGTTTTCACGAAAATCTGCATTTT 236825
>seq42510
Length=1301382
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || |||||| ||||| || || || | ||| ||
Sbjct 87143 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 87202
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 87203 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 87262
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | ||||| || || || || || ||
Sbjct 87263 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 87322
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| || || || ||||||||
Sbjct 87323 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 87354
>seq39797
Length=2305578
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || |||||| ||||| || || || | ||| ||
Sbjct 1757134 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 1757075
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 1757074 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 1757015
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || ||||| || | ||||| || || || || || ||
Sbjct 1757014 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 1756955
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| || || || ||||||||
Sbjct 1756954 CCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1756923
>seq44074
Length=2336235
Score = 107 bits (118), Expect = 3e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214
||||| | |||| ||| || |||||| || || || || || ||| || | |
Sbjct 1652747 AGATGAAGAGTAGACTCCTTTTGAATATTGTACTCAGACAAAGTATGTCCATCTTCCAGT 1652806
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || ||
Sbjct 1652807 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 1652866
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| |||| |||| || ||||| || ||||| || ||||| || || || ||
Sbjct 1652867 TTGGCCTTTACATTTTCTATCGTATCTGAGAGTTCAACCTCGAGAGTGATGGTCTTCCCC 1652926
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || ||||| || || || ||||||||
Sbjct 1652927 GTAAGGGTTTTCACGAAAATCTGCATTTT 1652955
>seq83510
Length=277
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | || || || ||||| || | || | |||||| || || ||||| ||
Sbjct 233 ACCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 174
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | ||| || | || || |||||||| || | || ||| || ||||||||
Sbjct 173 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGG 114
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
|| ||||| || || || || || | || | |||| |||||||||||||| ||| ||
Sbjct 113 AATACCTTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGAC 54
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || || || || || || || ||||| || || || ||||| ||
Sbjct 53 CTCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3
>seq40450
Length=975263
Score = 102 bits (112), Expect = 1e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214
||||| | |||| ||| || ||| || |||| || || || | ||| || | |
Sbjct 15911 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGT 15970
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| | || ||||| || | ||| || ||||||||||| |||||||| ||||| || ||
Sbjct 15971 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 16030
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| |||| |||| ||||| || | ||||| || || || ||||| || ||
Sbjct 16031 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCC 16090
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
|||| ||||| ||||| || ||||||||
Sbjct 16091 CTTAGGGTTTTCACAAAAATCTGCATTTT 16119
>seq17706
Length=950375
Score = 100 bits (110), Expect = 5e-16
Identities = 150/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|| ||||| | |||| ||| || |||||| ||||| || || || | | | ||
Sbjct 545088 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCACCTTCC 545147
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
| ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 545148 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 545207
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| |||| |||| || |||| || | ||||| || || || || || ||
Sbjct 545208 ATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTC 545267
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| | || ||||| || || || ||||||||
Sbjct 545268 CCCATAAGAGTTTTCACGAA-ATCTGCATTTT 545298
>seq112392
Length=498
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
||| | |||||| | | ||||| || || || | || | ||| || |||||||||
Sbjct 114 TTACAAACCACCGCGGAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTATA 173
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||||| || || | ||| || | |||||||| ||||| || || | |||||| ||
Sbjct 174 GTCGGCCAAAGTACGGCCATCCTCCAGCTGTTTTCCAGCAAAGATCAACCGCTGTTGGTC 233
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
||| || || || || || || || || || | ||| | ||| ||| ||||| |||
Sbjct 234 AGGGGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTCACATTATCAATGGTATCCGAACT 293
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||| || || || || || || || || | || || ||||| || |||||
Sbjct 294 CTCAACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTAACAAAAATCTGCAT 347
>seq21918
Length=9848887
Score = 93.3 bits (102), Expect = 8e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| |||||||| | || || ||||| ||||| || | |||||| || || |||||
Sbjct 7768890 ATCCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 7768949
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | ||| || | || ||||||||||| || | ||||| || ||||||
Sbjct 7768950 GACAGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 7769009
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || |||||||| || || | || | ||| ||| || || | ||||
Sbjct 7769010 GGGATGCCCTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 7769069
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || || || || || || || || || || ||||||
Sbjct 7769070 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 7769120
>seq43693
Length=2839110
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || ||||| || || ||||| || | ||| || ||||||||||| | |||||| ||
Sbjct 374694 ATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAACTCCTTCCTT 374635
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| |||| |||| | |||| | | ||||| || || || ||
Sbjct 374634 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGAT 374575
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362
|| || ||||| || ||||| || || || |||||||
Sbjct 374574 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 374537
>seq69637
Length=240
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || ||||| || || | | ||| || ||||| || ||||||||||| ||||| |||
Sbjct 215 TGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATTCCTTCTTTGTCTTGGATT 156
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | |||| || || || |||| || || || || || || || |||||
Sbjct 155 TTGGCCTTCACATTTTCGATTGTGTCTGAAGGTTCGACCTCAAGTGTGATGGTCTTACCA 96
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||| ||||||||
Sbjct 95 GTCAGGGTCTTGACAAAGATTTGCAT 70
>seq18191
Length=3674030
Score = 86.0 bits (94), Expect = 1e-11
Identities = 287/420 (68%), Gaps = 45/420 (11%)
Strand=Plus/Plus
Query 39975 ttattttgta-atatttatgattatatt-tataaaaat-tcaataattatattatatatt 40031
|||| | ||| |||||||| || ||||| |||||| || | ||| |||||||||||
Sbjct 3039250 TTATATAGTATATATTTAT-ATGATATTATATAAATATATAAATTTATATATTATATAAA 3039308
Query 40032 tacatcgt-----tatattGCCTTTA-ACATCATAAAAA----ATAACATGGatat-tat 40080
|| ||| | |||||| | | | |||||| ||| ||||||| ||| |||
Sbjct 3039309 TATATCATATAAATATATTATATAAATATATCATATAAATATTATAACATAT-TATATAT 3039367
Query 40081 tgatatttatata-aatttttcattttttaaatta-catataataatataatttccataa 40138
| |||| ||||| ||| | | ||| ||| || | ||||||| | |||| | | |||
Sbjct 3039368 TTATATAAATATATAATATATGATTGATTATATAATCATATAACA-TATAGTATTTATAT 3039426
Query 40139 atataatgacaaatacattattatatataaaatggaaatatataaaatttctagaaaaaa 40198
||| || || ||| || |||||||||| ||| || |||||| || | ||| | | ||
Sbjct 3039427 ATAATATTCCACATA--TTGTTATATATAATATGTAATTATATATAAGTACTACACACAA 3039484
Query 40199 ttaaaccaaaaaatataaataaatGCATAGCCATAGTATATGATAGAAAATGCAATGAAT 40258
|| | | | | |||| ||||| ||| || ||||| ||| | | | || |||
Sbjct 3039485 ATACATTATATATTATA--TAAAT--ATA----TAATATATAATATACACAGATAT-AAT 3039535
Query 40259 TAACAAAATATAA-ATATTGTTATAATCATTATAAAATAATGAAAGAGTATTGTAATTTA 40317
| || |||| | |||| ||||||| || |||| ||||| | | |||| || |||
Sbjct 3039536 ATATAATATATTATATATAATTATAATTAT-ATAATATAATATATTA-TATTATA--TTA 3039591
Query 40318 TATCATTATTGGAATAATAGATATAAATATCAAGATGTAGAATTATATAATTTAATAGAT 40377
||| ||||| ||||| |||||| ||| | || ||||||||||| ||||| ||
Sbjct 3039592 TATAATTAT----ATAATT-ATATAA-TATAATTAT----AATTATATAATATAATATAT 3039641
>seq26904
Length=301527
Score = 84.2 bits (92), Expect = 4e-11
Identities = 301/448 (67%), Gaps = 56/448 (13%)
Strand=Plus/Plus
Query 46775 atatatattata-ataaactgtattatttg-actatttttaataatatatgttatggtat 46832
|||||||||||| ||| | | |||||| | | ||| |||| || ||||| |||| |||
Sbjct 85997 ATATATATTATATATATATTATATTATATATATTATATTTATTA-TATATATTATATTAT 86055
Query 46833 atatgta----atttACGATATTTGGAAATTTTAATATGTTTACTGATATGATATTTAAT 46888
|||| || ||||| |||| | ||| || ||| | || | |||| |||| || |
Sbjct 86056 ATATATATTATATTTATTATATAT----ATTATATTATATATATT-ATATTATATATATT 86110
Query 46889 AATTGGATAAACTGTATAAAATTAAGAGACATATGTATTATTTTATCTATAATAACTATT 46948
| | || | | ||| | ||| | |||| ||| ||| ||| ||| ||| ||||
Sbjct 86111 ATATTTATTATATATATTATATTTATT---ATATATAT-ATTATATTTATTATATATATT 86166
Query 46949 ATATTTAATTGTGCATTAACAGTATTAGAATtatactcattcatatatttaaaacata-t 47007
|||||| ||| | || |||| |||||| || |||||||| | ||| |
Sbjct 86167 ATATTT-ATTATATAT-----ATATT--TATTATATATAT---TATATTTATTATATATT 86215
Query 47008 acatatatcaaatatagcactatgtataataaataCTTCGttacttttaattaatatatt 47067
| |||||| | ||||| | ||| ||| ||| ||| | || || | || |||||||
Sbjct 86216 ATATATATTATATATATTA-TATTTATTATATATATT---ATATTTATTATATATATATT 86271
Query 47068 -tataaatttattattaatgtatgctatatacttaaatattagaattatagtaaaa---a 47123
|||| ||||||||| || ||| |||||| || ||| | ||||| ||||| |
Sbjct 86272 ATATATATTTATTAT--ATTTATCATATATA--TA---TTTATATTTATA-TAAAATATA 86323
Query 47124 tatttataatactatatattattagcatcgcgttgtatatattatta-actaatattaaa 47182
|||||||| | |||||| ||||| | ||||||| | || | | ||||| |
Sbjct 86324 TATTTATATTTATATATA-TATTA---------TATATATATAAATATATTTATATTTAT 86373
Query 47183 atatat-tcgtatGGTTTTATATCATAT 47209
|||||| | ||| ||||||| ||||
Sbjct 86374 ATATATAACATATTTATTTATATTATAT 86401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898130475411840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |