Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq38975 109 8e-19 seq69637 87.8 3e-12 >seq38975 Length=485 Score = 109 bits (120), Expect = 8e-19 Identities = 139/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || |||||||||||||| ||| || Sbjct 147 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATTACATTAGAAGTAGAATCATCA 206 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || || || |||||||| || || || || || || ||| Sbjct 207 GATACTATTGATAACGTTAAGGCGAAGATCCAAGATAAGGAGGGTATCCCACCCGACCAA 266 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||| || |||||| | || || |||||| | || ||||| || Sbjct 267 CAACGATTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCCTTTCGGATTACAAC 326 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 327 AT-TCAAAAG 335 >seq69637 Length=240 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||| || || || ||| | || |||||| ||| Sbjct 70 ATGCAAATCTTTGTCAAGACCCTGACTGGTAAGACCATCACACTTGAGGTCGAACCTTCA 129 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| ||||| ||||| ||||| |||||||| || || || || || Sbjct 130 GACACAATCGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGAATCCCACCTGACCAG 189 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | |||| | |||||||||||||| |||||| Sbjct 190 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAAGAT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730632282019200