Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11730 95.1 4e-14 seq9420 89.7 2e-12 >seq11730 Length=1413057 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 162206 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 162147 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 162146 GAAAAAGAACTCGGTGGGTGTGAGGCCAGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 162087 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||||||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 162086 CTCGGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 162027 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || |||||||| || ||||||||||| || Sbjct 162026 AATCCGCTTTCCCTCCACGTTCTGCTGCCC 161997 >seq9420 Length=356144 Score = 89.7 bits (98), Expect = 2e-12 Identities = 364/566 (64%), Gaps = 11/566 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| | || || | || || |||||||||||||| || | ||| | Sbjct 53470 TTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCT 53411 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 53410 TCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCCCTG 53351 Query 133196 ACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | | || | | ||||||| | | ||| || | | || ||||| || |||||||| Sbjct 53350 AAGCCCAAGGAGAGAGATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 53292 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || |||||| || | || |||| ||||||||| || | |||||||| Sbjct 53291 CATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCG 53232 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || | ||| | || ||||| || || || || |||||| | ||| | || Sbjct 53231 CTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACATACATTCTGAAATGTATAGTTTCCT 53172 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGC 133432 ||||| |||||||| |||||| || | | | | || |||| |||| | | | Sbjct 53171 TATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCACTGAAAC 53112 Query 133433 GAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 || | |||||| | || ||||| | || ||||| | | ||||| |||||| Sbjct 53111 GA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAA 53054 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 || | | || | ||| | || | ||||||| || || ||||| |||| |||| Sbjct 53053 GCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTTTT---CTGGT 52997 Query 133553 GCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 52996 -TATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTC 52938 Query 133612 TAACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 52937 CAATGAACTTATTAGCAGAGATGAGG 52912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469262160371544