Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq23478 136 3e-27 seq38975 91.5 1e-13 >seq23478 Length=255467 Score = 136 bits (150), Expect = 3e-27 Identities = 224/321 (70%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || || || || || |||||||| ||||| | ||||| || ||||| ||||| | | Sbjct 126954 TCTGTTTCAGGATTCTCACATTCAGGACAGAGAACAAATTTTTTAATGAATCCATCCAAC 126895 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | |||| || || || || ||||| ||| | || || || || | Sbjct 126894 ATGTCTTGCAGCTTATTCACCTCATGAGATCCATTGACAATGTAACGGTCATTCTTAACA 126835 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 || | ||| || || || |||||||| || || || || || || || || | | || Sbjct 126834 TCAAACTGGGTCTGTGCTCCCAGCTCACAACCAAAATATTTGGTGGGATACGTTGGAGGC 126775 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || ||||||||| || | || | ||||||| || || |||||||| || || || Sbjct 126774 CGATTAAGCGCCTTTGCAACATCAACCGTGTTGACTATAACTGTCTTGATTCCATTTCCT 126715 Query 34558 TTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCA 34615 || || ||||||||||| |||| || ||||| |||||||| |||||| ||| | || Sbjct 126714 TTGCCCTCGACCTTGGCAATCAGA--CGGGGCATCTTGTAGCGATAGAACTGGTCTGACA 126657 Query 34616 CATTGCGGTTAACGTTCACAG 34636 | ||||||| || || |||| Sbjct 126656 CGCTGCGGTTGACATTGACAG 126636 >seq38975 Length=485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || || || |||||||| | ||| || | Sbjct 147 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATTACATTAGAAGTAGAATCATCA 206 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || |||||| || || || || | || || ||| Sbjct 207 GATACTATTGATAACGTTAAGGCGAAGATCCAAGATAAGGAGGGTATCCCACCCGACCAA 266 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || || ||| ||||||| | |||||| | ||||||||||| Sbjct 267 CAACGATTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCCTTTCGGATTACAAC 326 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| || |||||| ||||| Sbjct 327 ATTCAAAAGGAATCGACATTGCACTTGGTG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412159770423416