Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq27776 118 1e-21 seq37045 93.3 4e-14 >seq27776 Length=595415 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 |||||||||||||| ||||||||||||||||| ||||| |||||| ||| | | || Sbjct 552269 TTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCAC 552210 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTT 21121 || | | | ||| | |||| |||| | || | || || || | ||| Sbjct 552209 GCACATGTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCA 552153 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | ||||| |||| ||||| ||| Sbjct 552152 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTGACCTG 552093 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || || | || ||||| || ||| | | |||||||||||||||||||||| Sbjct 552092 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 552041 Score = 96.9 bits (106), Expect = 3e-15 Identities = 201/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||| | ||| | ||| |||| | || ||| | || | Sbjct 553071 ATGCCTTCTATGTGGCAGACCTGGGAAACATTCTAAAGAAACATCTGAGGTGGTTAAAAG 553012 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| | |||| || ||||| || || || | || | || | || | Sbjct 553011 CTCTCCCTCATGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCGTG 552953 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 552952 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 552893 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||| ||||| || Sbjct 552892 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTA 552833 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAA 20500 || || | | |||||| ||| | | |||||| | ||||||||||| |||||||| Sbjct 552832 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTCATAGTGAA 552776 >seq37045 Length=3135053 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 1256737 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 1256796 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 1256797 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 1256855 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 1256856 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 1256911 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 1254182 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 1254241 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 1254242 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 1254301 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| ||| | | ||| ||| Sbjct 1254302 GATAGTGAAGTTGAGTTGATGAAAGTTG 1254329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462760400108160