Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq27776 118 1e-21
seq37045 93.3 4e-14
>seq27776
Length=595415
Score = 118 bits (130), Expect = 1e-21
Identities = 166/232 (72%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064
|||||||||||||| ||||||||||||||||| ||||| |||||| ||| | | ||
Sbjct 552269 TTTATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCAC 552210
Query 21065 GCTCGTCCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTT 21121
|| | | | ||| | |||| |||| | || | || || || | |||
Sbjct 552209 GCACATGTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCA 552153
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|| ||||| ||||| || | || |||||| | ||| | ||||| |||| ||||| |||
Sbjct 552152 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTGACCTG 552093
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233
|| || | || ||||| || ||| | | ||||||||||||||||||||||
Sbjct 552092 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 552041
Score = 96.9 bits (106), Expect = 3e-15
Identities = 201/297 (68%), Gaps = 2/297 (1%)
Strand=Plus/Minus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||| | |||| ||| || ||| | ||| | ||| |||| | || ||| | || |
Sbjct 553071 ATGCCTTCTATGTGGCAGACCTGGGAAACATTCTAAAGAAACATCTGAGGTGGTTAAAAG 553012
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323
|| | ||| | |||| || ||||| || || || | || | || | || |
Sbjct 553011 CTCTCCCTCATGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCGTG 552953
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
|||||||| ||||| | || || ||||||||||| || ||| || || |||||
Sbjct 552952 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 552893
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
|||| | |||| | || | |||| ||||| | | ||| ||||| ||||| ||
Sbjct 552892 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTA 552833
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAA 20500
|| || | | |||||| ||| | | |||||| | ||||||||||| ||||||||
Sbjct 552832 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTCATAGTGAA 552776
>seq37045
Length=3135053
Score = 93.3 bits (102), Expect = 4e-14
Identities = 130/177 (73%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|| ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| |||
Sbjct 1256737 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 1256796
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241
|| || | || ||||| || ||| | | |||||||||||||||||||||| || |
Sbjct 1256797 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 1256855
Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296
||| | || || || || ||||| ||| || | || | | ||||||| || ||||
Sbjct 1256856 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 1256911
Score = 82.4 bits (90), Expect = 7e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431
|| || ||||| |||| | |||||| || | |||| ||||| | | ||| ||||||
Sbjct 1254182 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 1254241
Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491
||||| || || || || | |||||| ||| | | |||||| | |||||||||||
Sbjct 1254242 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 1254301
Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519
|||||||||| ||| | | ||| |||
Sbjct 1254302 GATAGTGAAGTTGAGTTGATGAAAGTTG 1254329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462760400108160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |