Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq42477 210 3e-49
seq9262 194 2e-44
seq44591 145 9e-30
>seq42477
Length=2619879
Score = 210 bits (232), Expect = 3e-49
Identities = 604/921 (66%), Gaps = 11/921 (1%)
Strand=Plus/Plus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
||||| | | || ||| || | |||||||| || || | ||| ||| | || |||
Sbjct 692673 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 692732
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || || |||| ||| || ||| || ||||| || | || || | ||| ||
Sbjct 692733 TTATTGGCAAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 692789
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
| |||||| || |||||||| || || ||| || || || |||| || | | |||
Sbjct 692790 ATGCACACCGAGCGCACGTGGACCCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACA 692849
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| ||||| ||||||||||||| || ||||| | | || |||||||| || |||
Sbjct 692850 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 692909
Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||| | ||| | | | | | || || || | || | ||||| | || |||||
Sbjct 692910 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 692968
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
|| | || || || || || || || | || ||||||||| |||| || |||
Sbjct 692969 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTC 693028
Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485
|| | ||| | || || || || | || | |||||| || || ||||||||
Sbjct 693029 ATTCTGTAGTACATACCCCACATACTCTCTACTGACCACAAAGTAGGCACTGCCAGAAAA 693088
Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545
| ||| | | ||||| || |||| | || ||||| | | |||| |
Sbjct 693089 AAGAGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 693148
Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604
| |||| | | | ||| ||||||| | |||| ||| | | | || || |
Sbjct 693149 AATGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 693207
Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664
| || ||||| ||| || |||||||| | || || ||||| ||||| ||||
Sbjct 693208 CCAGGCTGTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 693267
Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724
||||| || | || || ||||| || | || ||||| || | || | | | || |
Sbjct 693268 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 693327
Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784
| |||| | ||||| || || ||||| || || |||||||| || || || || ||||
Sbjct 693328 GGTCCTTCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 693387
Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844
|||| | |||| ||||||||||| |||||| ||| | || || |||| || |
Sbjct 693388 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTA 693447
Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902
| | ||| || | ||| | || || || | ||| || | ||||||||| ||
Sbjct 693448 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 693505
Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962
|||||||||||| | || || | ||| || ||||| || || ||||| |||||||| ||
Sbjct 693506 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 693565
Query 162963 TATGGGGAACTCAGCCTCCTC 162983
||| || ||||| ||||| ||
Sbjct 693566 TATTGGAAACTCTGCCTCTTC 693586
>seq9262
Length=4723420
Score = 194 bits (214), Expect = 2e-44
Identities = 238/325 (73%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|||||| || || |||| | || || || || || || ||||| ||||| || | ||
Sbjct 1893360 CATAGACAGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGAC 1893419
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| ||
Sbjct 1893420 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 1893479
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || |||||||| | | |||||| || | |||||||| || || || || |
Sbjct 1893480 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 1893539
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || |
Sbjct 1893540 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 1893599
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| | ||||| | | | |||| |||||||||||||| |||||||| |||| || |
Sbjct 1893600 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 1893659
Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095
| ||||| || || || | ||| ||
Sbjct 1893660 CTCTTTCATCCTGGGTCAGCACTTG 1893684
Score = 129 bits (142), Expect = 7e-25
Identities = 165/224 (74%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| || | ||| || |||||||||| ||| | || | ||| ||||||||||
Sbjct 1890814 ACAGTTTGCCTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 1890871
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||| | ||||| ||||| || || || ||||| |||||||| || |||||
Sbjct 1890872 -TCCCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCA 1890930
Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681
|| | || ||| | || ||||||||||| || || || | | || ||||| ||
Sbjct 1890931 TTTGGGTG-AGACAGCGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 1890989
Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
|| | || ||||| | ||||| ||||||||||| |||||||
Sbjct 1890990 GATCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1891033
>seq44591
Length=802963
Score = 145 bits (160), Expect = 9e-30
Identities = 403/607 (66%), Gaps = 17/607 (3%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || || | | |
Sbjct 467979 TCCAGTTAAAGTAACTAAGGTACAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 467920
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | |||||
Sbjct 467919 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 467860
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || ||||| |||| ||| || || | ||||| | || |||| || ||
Sbjct 467859 TCTCATAGTTTTCTCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 467800
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || ||| |||| | || || ||||| | ||||| ||||
Sbjct 467799 TGTAGAGCTTTTCTGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 467740
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
|||| | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 467739 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 467682
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 467681 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 467623
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| || ||||| |||||||| || ||
Sbjct 467622 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 467568
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | | || | ||| | | ||||| ||||| || ||||| ||
Sbjct 467567 TTCAAACACGAAAGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 467508
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
|||||| | || || | || || || || | || || || | || |||| |||
Sbjct 467507 GTCGCGGCGATAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 467450
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || |
Sbjct 467449 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 467390
Query 177480 GTAGGTA 177486
|||||
Sbjct 467389 TGAGGTA 467383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577452194035200
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