Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq44056 129 4e-25
seq21918 105 4e-18
seq44178 102 5e-17
seq41127 102 5e-17
seq83510 96.9 2e-15
seq42152 86.0 4e-12
seq68558 84.2 1e-11
seq37440 84.2 1e-11
>seq44056
Length=626226
Score = 129 bits (142), Expect = 4e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || || ||||||| || || ||| |||||| || |||||||| || |||
Sbjct 244787 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 244846
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| |||||||| |||| ||||||||| || | ||
Sbjct 244847 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 244906
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| ||| | | | ||| |||||| || | || ||
Sbjct 244907 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATGGTGTCACTGGGCTCGAC 244965
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| ||||| || || || |||||||||||||||||
Sbjct 244966 CTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCAT 245013
>seq21918
Length=9848887
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| |||||| || |||||||| || |
Sbjct 7767979 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 7768038
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || |||||| | || |||| ||||| || ||||| ||||| | |||||| || | |
Sbjct 7768039 ACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 7768098
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCC 33699
| | ||||| || || || || || | |||| ||| ||||||||| | ||
Sbjct 7768099 GGATGCCTTCCTTATCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCTCG 7768157
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || || | || || || |||||||||||
Sbjct 7768158 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768207
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 7768209 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7768268
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || ||||| ||||| ||||| | |||||| || | ||
Sbjct 7768269 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 7768328
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || || || | |||| ||| |||||| || | || ||
Sbjct 7768329 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 7768387
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 7768388 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768435
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || | ||| |||||| || |||||||| || ||
Sbjct 7768893 CCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7768952
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || |||| || ||||||||||| |||| | |||||| || | ||
Sbjct 7768953 AGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7769012
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || || || || || || | |||| || | |||||| || | || ||
Sbjct 7769013 ATGCCCTCCTTATCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 7769071
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|||| ||||| || || || || | || || || ||||||||||| ||
Sbjct 7769072 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATTGT 7769122
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 7768437 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7768496
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || ||||| ||||| ||||| | |||||| || | ||
Sbjct 7768497 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 7768556
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| || || ||||| || || || | |||| ||| |||||| || | || ||
Sbjct 7768557 ATGCCCTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 7768615
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 7768616 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768663
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | ||||| || || ||| |||||| || |||||||| || ||
Sbjct 7768665 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7768724
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || ||||| ||||| ||||| | |||||| || | ||
Sbjct 7768725 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 7768784
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| || || || || || | |||| || | |||||| || | || ||
Sbjct 7768785 ATGCCTTCCTTATCCTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 7768843
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 7768844 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768891
>seq44178
Length=3241816
Score = 102 bits (112), Expect = 5e-17
Identities = 138/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 33561 TTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAAT 33620
||||| | | |||| || ||||| ||||| | || |||| ||||| |||||||| ||
Sbjct 924522 TTTTTTTTTTATGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATAT 924581
Query 33621 CAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGT 33680
|| ||||||||| || | || | ||| || ||||| |||||| ||| | ||| |
Sbjct 924582 CAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCT 924640
Query 33681 CAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAA 33739
|| |||||| || | || || |||| ||||| ||||| || || | || || ||||
Sbjct 924641 CAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAA 924700
Query 33740 AGATCTGCAT 33749
||||||||||
Sbjct 924701 AGATCTGCAT 924710
>seq41127
Length=7874669
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||| || || ||||||| || || ||| |||||| || |||||||| || |||
Sbjct 7357802 CCACCTTGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 7357861
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| || ||||| |||| | ||| ||| || | ||
Sbjct 7357862 AGAGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGG 7357921
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||| || |||| || ||| ||| ||| ||| |||||| || | || ||
Sbjct 7357922 ATACCCTCCTTGTGTTGAACTTTGGCTTTGT-CATTCTCAATGGTGTCACTGGGCTCGAC 7357980
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| | ||| ||||| ||||| | || || ||||||||||||||
Sbjct 7357981 CTCAAGGGGGATGGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 7358028
>seq83510
Length=277
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || || | ||||| || || ||| |||||| || |||||||| || |
Sbjct 234 CACCACCACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 175
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|||| ||||| | || || | || || |||||||| |||| |||||||| || | |
Sbjct 174 AGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAG 115
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCC 33699
| | |||||| ||||| || ||| |||| ||| ||| || ||| | ||
Sbjct 114 GAATACCTTCCTTGTCCTGGATCTTCGCCTTCA-CATTTTCAATAGTATCGGAAGGCTCG 56
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || | ||||| || |||||||||||
Sbjct 55 ACCTCAAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 6
>seq42152
Length=979470
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||||| ||| | |||| || || || ||| || || |||||||| || ||
Sbjct 315741 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 315800
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || || ||||| || | | |||||| || | ||
Sbjct 315801 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 315860
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || ||||| ||| |||| || | |||||| || | ||||
Sbjct 315861 AATGCCTTCCTTATCCTGGATTTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 315919
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| ||||| || || || || | || || || |||||||||||
Sbjct 315920 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 315968
Score = 84.2 bits (92), Expect = 1e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||||| ||| | |||| || || || ||| || || |||||||| || ||
Sbjct 315513 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 315572
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| ||||| | || |||| || || || ||||| || | | |||||| || | ||
Sbjct 315573 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 315632
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || ||||| ||| |||| || | |||||| || | ||||
Sbjct 315633 AATGCCTTCCTTATCCTGGATTTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 315691
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | || || || ||||||||||||
Sbjct 315692 CCTCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 315741
>seq68558
Length=238
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || |||||||| |||| || || || |||| |||| || |||||||| ||
Sbjct 235 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCCTCCAGCTGCTTTCCGGCGAA 176
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||||||||||||||| | || | ||||| ||||| || || | | || |
Sbjct 175 GATCAAACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATCTT-GGCCTTGACGT 117
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||||| ||||| || | ||||| || || || || | ||||| |
Sbjct 116 TGTCGATGGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTGCCCGTGAGGGTTTTGA 57
Query 33737 CAAAGATCTGCAT 33749
| |||||||||||
Sbjct 56 CGAAGATCTGCAT 44
>seq37440
Length=3232823
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || ||| | ||||| || || ||| ||||| || ||||| || || |||
Sbjct 1723546 CCACCTCACAGACGCAGCACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTGAG 1723487
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||| | || ||| ||||| || ||||| |||| || |||||| || || |
Sbjct 1723486 AGACTGCAGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 1723427
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| || || ||||| |||| | | || |||| ||| |||||| | | |||||
Sbjct 1723426 ATGCCCTCCTTGTCTTGGATTT-CGGCTTTGACATTCTCAGTGGTGTCAGTGGCCTCCAC 1723368
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || | | || || ||||||||||||||
Sbjct 1723367 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 1723320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328161128087040
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