Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq21918 102 8e-17
seq19734 100 3e-16
seq83510 98.7 9e-16
seq44056 86.0 6e-12
>seq21918
Length=9848887
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| ||||| || | | |||||||| || ||||||||||| || ||| ||
Sbjct 7767989 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 7768048
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| |||||||| || | | |||| | | ||| || || ||||| ||||||||
Sbjct 7768049 TCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 7768108
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||||| || ||| || | | || | || ||| | ||||| || |||| ||
Sbjct 7768109 CTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGT 7768168
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || |||||||| || || | ||| ||||||||
Sbjct 7768169 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768207
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||| ||| |||||| ||||| || || | |
Sbjct 7768698 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 7768757
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| || || ||||| |||||||| ||||| || ||| || |
Sbjct 7768758 AAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTTGCCTTGACA 7768817
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || || |||||||| || ||
Sbjct 7768818 TTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 7768877
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 7768878 ACGAAGATCTGCAT 7768891
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||| || |||||| ||||| || |||| |
Sbjct 7768926 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTTCCGGCA 7768985
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| || || ||||| ||||| || ||||| || ||| || |
Sbjct 7768986 AAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCTTGGATCTTTGCCTTGACA 7769045
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || || | || | || || ||||||||||| ||
Sbjct 7769046 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 7769105
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 7769106 ACGAAGATCTGCAT 7769119
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||| ||| |||||| ||||| || || | |
Sbjct 7768242 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 7768301
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| || || ||||| |||||||| || || || ||| || |
Sbjct 7768302 AAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 7768361
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || || |||||||| || ||
Sbjct 7768362 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 7768421
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 7768422 ACGAAGATCTGCAT 7768435
>seq19734
Length=6466590
Score = 100 bits (110), Expect = 3e-16
Identities = 82/100 (82%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562
|||||| ||| ||||| | |||||||||||||||||| ||| ||||| || ||||| |
Sbjct 5926309 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 5926250
Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|||| |||||||| || | |||||| ||||||| |||||
Sbjct 5926249 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGG 5926210
>seq83510
Length=277
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| |||| |||| || | | | |||||||| || ||||||||||| | |||
Sbjct 227 ACGCAGCCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 168
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| || ||||| || |||| | |||| || ||||| || || ||||| || ||
Sbjct 167 GCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGGTCAGGAGGAATACC 108
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || || || |||| | ||| | |||||||| ||||| || || |
Sbjct 107 TTCCTTGTCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGAAGGCTCGACCTCAAG 48
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || ||||| ||||| | ||| ||||||||
Sbjct 47 GGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCAT 6
>seq44056
Length=626226
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962
|||| |||||| |||| || | | | |||||||| || ||||||||||| | ||
Sbjct 244793 CGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTG 244852
Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022
|| |||||| |||||||| |||| | | || |||||||| || || || || || ||
Sbjct 244853 CGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCC 244912
Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082
|| || || |||||| ||| | | || | || || | ||||| || || |
Sbjct 244913 TCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGG 244972
Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | ||||| || || | || |||| || |||||||||
Sbjct 244973 GTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATG 245014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475803868288320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |