Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq34601 104 7e-19
seq44526 98.7 3e-17
seq41206 98.7 3e-17
seq30957 98.7 3e-17
seq21918 98.7 3e-17
seq3029 82.4 2e-12
seq23917 80.6 8e-12
>seq34601
Length=561214
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 348840 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 348781
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 348780 CCGGGTTTCGGC 348769
Score = 100 bits (110), Expect = 9e-18
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 333645 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGGTT 333586
Query 2836 TCAGC 2840
|| ||
Sbjct 333585 TCGGC 333581
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 295847 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 295906
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 295907 CCGGGTTTCGGC 295918
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 494909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 494850
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 494849 CCGGGTTTCGGC 494838
Score = 89.7 bits (98), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825
|||||| ||||||| |||||||||| ||||||||| ||| || ||||||||||||||||
Sbjct 295123 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACGAGACCTTAAAGGTCCCTGGTTCA 295064
Query 2826 ACCCCGGGCTTCA 2838
|||||||| ||||
Sbjct 295063 ACCCCGGGTTTCA 295051
Score = 89.7 bits (98), Expect = 2e-14
Identities = 62/69 (90%), Gaps = 1/69 (1%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGG-GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|| ||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 312195 GCCGAAATAGCTCAGTTTGCGAGAGCATTAGACTGAAGATCTAAAGTTCCCTGGTTCAAT 312136
Query 2828 CCCGGGCTT 2836
|||||| ||
Sbjct 312135 CCCGGGTTT 312127
>seq44526
Length=2535370
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 456698 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 456639
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 456638 CCGGGTTTCGGC 456627
>seq41206
Length=3409481
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3015799 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3015858
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3015859 CCGGGTTTCGGC 3015870
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 3024946 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3025005
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 3025006 CCGGGTTTCGGC 3025017
>seq30957
Length=2195082
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1379878 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1379937
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1379938 CCGGGTTTCGGC 1379949
>seq21918
Length=9848887
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 7783674 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7783615
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 7783614 CCGGGTTTCGGC 7783603
>seq3029
Length=1403100
Score = 82.4 bits (90), Expect = 2e-12
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|||| |||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||
Sbjct 638105 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTACAGGCTTCTGGTTCA 638164
Query 2826 ACCCCGGGCTTCAGC 2840
| || ||| ||| ||
Sbjct 638165 ATCCTGGGTTTCGGC 638179
>seq23917
Length=1031180
Score = 80.6 bits (88), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||||||||| | ||||||||||||||||||||||||||||| | || ||
Sbjct 155011 AAATAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 154952
Query 2833 GCTT 2836
| ||
Sbjct 154951 GTTT 154948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15826108317240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |