Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq34601 104 7e-19 seq44526 98.7 3e-17 seq41206 98.7 3e-17 seq30957 98.7 3e-17 seq21918 98.7 3e-17 seq3029 82.4 2e-12 seq23917 80.6 8e-12 >seq34601 Length=561214 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 348840 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 348781 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 348780 CCGGGTTTCGGC 348769 Score = 100 bits (110), Expect = 9e-18 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | Sbjct 333645 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGGTT 333586 Query 2836 TCAGC 2840 || || Sbjct 333585 TCGGC 333581 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 295847 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 295906 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 295907 CCGGGTTTCGGC 295918 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 494909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 494850 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 494849 CCGGGTTTCGGC 494838 Score = 89.7 bits (98), Expect = 2e-14 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGA--AGATCT-AAAGGTCCCTGGTTCA 2825 |||||| ||||||| |||||||||| ||||||||| ||| || |||||||||||||||| Sbjct 295123 GCTGAAATAGCTCAATTGGGAGAGCGTTAGACTGACGAGACCTTAAAGGTCCCTGGTTCA 295064 Query 2826 ACCCCGGGCTTCA 2838 |||||||| |||| Sbjct 295063 ACCCCGGGTTTCA 295051 Score = 89.7 bits (98), Expect = 2e-14 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGG-GAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 312195 GCCGAAATAGCTCAGTTTGCGAGAGCATTAGACTGAAGATCTAAAGTTCCCTGGTTCAAT 312136 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 312135 CCCGGGTTT 312127 >seq44526 Length=2535370 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 456698 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 456639 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 456638 CCGGGTTTCGGC 456627 >seq41206 Length=3409481 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3015799 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3015858 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3015859 CCGGGTTTCGGC 3015870 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3024946 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3025005 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3025006 CCGGGTTTCGGC 3025017 >seq30957 Length=2195082 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1379878 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1379937 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1379938 CCGGGTTTCGGC 1379949 >seq21918 Length=9848887 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7783674 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7783615 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7783614 CCGGGTTTCGGC 7783603 >seq3029 Length=1403100 Score = 82.4 bits (90), Expect = 2e-12 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| |||| |||||||||||||||||| |||||||||| ||||| ||| |||||||| Sbjct 638105 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTACAGGCTTCTGGTTCA 638164 Query 2826 ACCCCGGGCTTCAGC 2840 | || ||| ||| || Sbjct 638165 ATCCTGGGTTTCGGC 638179 >seq23917 Length=1031180 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| | ||||||||||||||||||||||||||||| | || || Sbjct 155011 AAATAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCTGG 154952 Query 2833 GCTT 2836 | || Sbjct 154951 GTTT 154948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15826108317240