Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9262 275 7e-69 seq11758 159 4e-34 seq43609 149 7e-31 seq23601 122 1e-22 seq30845 100 3e-16 >seq9262 Length=4723420 Score = 275 bits (304), Expect = 7e-69 Identities = 251/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||| ||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 1893684 CAAGTGCTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 1893625 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 1893624 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 1893565 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 1893564 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 1893505 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 1893504 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 1893445 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 1893444 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 1893385 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 1893384 GGAACAGCCTGCCTCAC 1893368 >seq11758 Length=1720543 Score = 159 bits (176), Expect = 4e-34 Identities = 134/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 1620501 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 1620442 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||| | ||| ||||| ||||||||||| |||| Sbjct 1620441 TGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCATGTGAACT 1620394 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| || ||||||||||||| ||| Sbjct 1620393 CCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 1620347 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 1618121 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 1618062 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||||| |||||||||| || ||| Sbjct 1618061 TAGAAGCCTACATGACAATGAAGATG 1618036 >seq43609 Length=3422226 Score = 149 bits (164), Expect = 7e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 1891087 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 1891028 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 1891027 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 1890968 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 1890967 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 1890923 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 1886910 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGCG 1886851 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 1886850 GAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 1886791 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | ||||| ||| ||| || Sbjct 1886790 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTGGAAGA 1886751 >seq23601 Length=1137639 Score = 122 bits (134), Expect = 1e-22 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 146876 TGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGT 146935 ||||||| ||||| |||| || | || |||||||||||||| | | | ||| Sbjct 137002 TGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTCGCAATGTGAC 136943 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | ||||| || | ||| | |||| || || |||||||| || ||||| || | || | Sbjct 136942 TTAGGTAAACATACGCATTTCCCAAAGTATGTACAAAGTCACCGGGCTTTGGGTCCGTGA 136883 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 ||| || | || || |||||||| | ||||||||| |||||||||| | | |||||| Sbjct 136882 TGTGCGCGATCACATAAGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGTG-CACCCAGG- 136825 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115 |||| ||||| || | ||||||||| || ||||| || | ||||| | |||| Sbjct 136824 ------CCCCTGACCTTTGTTGCAGCTGGCAGGACAGCTCACCATTCACCACGAAGAACT 136771 Query 147116 GGC 147118 ||| Sbjct 136770 GGC 136768 >seq30845 Length=2656158 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| | Sbjct 2132557 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 2132616 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 2132617 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 2132676 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| | ||| Sbjct 2132677 CCTGCTCTTCCTGTTCACACTGCCCTTCTTGAT 2132709 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | || || | ||||| | ||||| | | ||||||| Sbjct 2074120 GTATTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 2074061 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| ||| ||||||||||| || || Sbjct 2074060 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTACTCAACCTGGCCATTTCGGA 2074001 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||||||| || || ||||| |||| || ||| | | | Sbjct 2074000 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT--ATGTCAGGGAGCA----TAA 2073947 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | || ||| ||||||||||| | | ||| ||| || | |||| Sbjct 2073946 CTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGTTTTATTACACAGGCTTGTA 2073887 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||| || | || || ||||| |||| | |||||||| || || |||| Sbjct 2073886 CAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGTACCTGGCCATTGT 2073833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582499629676800