Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 297 3e-75
seq30183 223 5e-53
seq37045 129 8e-25
seq43468 120 4e-22
seq19734 109 8e-19
seq38390 104 3e-17
>seq9420
Length=356144
Score = 297 bits (328), Expect = 3e-75
Identities = 628/934 (67%), Gaps = 16/934 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326
|||| |||||| |||| || | |||| ||| ||| | | ||||| ||||||||
Sbjct 52547 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 52606
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || || | || | ||||| || || || || ||| || ||| ||||| |
Sbjct 52607 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 52661
Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446
|||| || ||||| || || | | | | || | || || | ||| ||
Sbjct 52662 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTCAAACCCAGTTCCAGCATG- 52720
Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506
||| ||||| ||||| || |||||| ||||| | |||||||| || || | |
Sbjct 52721 -TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCT 52779
Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566
| || || | ||||| || || || || | ||| || || || | | |||||
Sbjct 52780 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTT 52839
Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626
| ||||| || || ||| || | | ||||| ||||| | ||| || || |
Sbjct 52840 CTCTTACTCTCTACTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAAT 52899
Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686
|||| |||| ||||||||||| ||||| | ||| || ||||||||||| |||||||| |
Sbjct 52900 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 52959
Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746
| || || || |||||||| ||||| | |||||| | |||||||||| |||||||
Sbjct 52960 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 53016
Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803
|||| ||||| | |||| | || || || | | || || | ||||| | |
Sbjct 53017 CTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCA 53076
Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863
|||||||| || |||||||| ||||||||||| ||||| | ||||| | |||| | |
Sbjct 53077 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAGTGGCATTGAGGAGAAATT 53136
Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923
|||| | |||||| | || || || || | | |||||||||||| ||||| |
Sbjct 53137 CCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTTCAGAATGTA 53196
Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983
|||| || || || || || || || | ||||| | ||||| || || || || |||
Sbjct 53197 TGTTCTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTCTT 53256
Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
| ||||| ||| |||| |||||||| ||||| |||||||| || ||||| || |||
Sbjct 53257 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 53316
Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103
||||| ||||||| | | || | ||| ||| | ||||| || || |
Sbjct 53317 GAACATGGGATATAAAATCTCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCAAATGTCCT 53376
Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163
| || | || || || || || ||||| || || || || ||||| || ||||| | ||
Sbjct 53377 TGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCC 53436
Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197
| |||||| | || | | || || || |||||
Sbjct 53437 AGATATCATGGTACTCGGTGGGGAAGATGACAAA 53470
>seq30183
Length=85853
Score = 223 bits (246), Expect = 5e-53
Identities = 393/565 (70%), Gaps = 12/565 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| || | || ||| |||| |||||||| || ||||| | ||| || |||||||||||
Sbjct 31442 GCAAGCAACGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 31501
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| || || || || |||||||| ||||| |||||||| ||||||||| |
Sbjct 31502 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGCA 31561
Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACA-AGTCTCTCTCCGTAACTTGTATCATTAT 39791
| ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | ||
Sbjct 31562 GGTGCTTTCCACTAGGGCAAACGCTGCAACACATTCTCCATGGGTAACGTCT-TTGTTCC 31620
Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851
||||| | | ||||| | || |||||||| |||| |||||||||||| || ||||
Sbjct 31621 CAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 31679
Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
| |||||| | | |||| | |||||||| || ||| || || | ||| ||| |
Sbjct 31680 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGATTATTTA 31737
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971
| || ||||| ||||||| | || | || || || || || || | ||| ||||
Sbjct 31738 TGTCAGAATGTGTGTTTTCTCTAGCAGTTTGGAACCCATAGAAGCAGAAGGTTTCTGTAA 31797
Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031
| || | ||| | |||| |||| |||| ||||||| ||||| ||||||| || |
Sbjct 31798 TCTGAATTTCTTGAGCAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTG 31857
Query 40032 CAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089
|||| || ||| |||| | | | ||||||||| |||| || || ||| | |||
Sbjct 31858 CAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 31915
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
|| || || || || | || ||||| | || |||| || || ||||| | ||
Sbjct 31916 GTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTT 31975
Query 40150 TTTGTACATGTTCCATATATCACGA 40174
|| ||| | ||||| |||||| ||
Sbjct 31976 CTTATACGTTTTCCAAATATCATGA 32000
>seq37045
Length=3135053
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || ||||||||||| |||||||| || || || || |
Sbjct 1579222 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 1579281
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 1579282 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1579341
Query 39759 CAACAA 39764
| ||||
Sbjct 1579342 CTACAA 1579347
>seq43468
Length=1795776
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| ||
Sbjct 1442082 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 1442023
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 1442022 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 1441963
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 1441962 ACCACTCTTTCCCC 1441949
>seq19734
Length=6466590
Score = 109 bits (120), Expect = 8e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | ||| |||||||| ||||| || || || | || || |||||||| || |
Sbjct 5906921 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 5906862
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||||||||| || | ||||| | || || ||| |||| ||||| || |||||||
Sbjct 5906861 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 5906802
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || | ||||| || ||||||||||
Sbjct 5906801 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 5906754
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888
|||| ||| || || || | || |||||| ||| | || | ||| |||||||| ||
Sbjct 5921119 CCAGCAATGTAGCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCA 5921060
Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948
|||||| || | ||||| | || | |||||||| || || || ||||| ||||||
Sbjct 5921059 GATTTAGAAATCAATGCACACTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCT 5921000
Query 69949 ATCATGTTAAGAAGAAAACAGCTA 69972
|||| | |||||||||||||||
Sbjct 5920999 TTCATACTCAGAAGAAAACAGCTA 5920976
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||| ||||| || ||||| |||||||||||||| | || |||||||||| | |
Sbjct 5924694 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 5924635
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| || || || | || || ||||||| ||
Sbjct 5924634 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 5924575
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 5924574 TCCAGGTAAATAGC 5924561
>seq38390
Length=1205360
Score = 104 bits (114), Expect = 3e-17
Identities = 240/356 (67%), Gaps = 7/356 (2%)
Strand=Plus/Plus
Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406
||| || || ||||| ||| | || || || ||| |||| | || ||| ||||| |
Sbjct 764300 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTATCATCCAAAGCTTGAACTTCTTC 764359
Query 37407 CAGATCAGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTA 37465
| || |||||| | | | |||| | || ||||| || ||| ||| ||| | || |
Sbjct 764360 TATTTCTGGATAAAAAAATCCGTTTGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGA 764419
Query 37466 TTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTT 37525
|| ||| || ||| ||| || | ||| | | |||| ||| || ||||||||||
Sbjct 764420 CTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCTCTATAATCTT 764479
Query 37526 CATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGATCTAGGAG 37582
|| | || || || |||||||||||||| |||| || ||| || || | ||||
Sbjct 764480 CACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCGTGGAG 764539
Query 37583 CTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTC 37642
||| |||||||||||| |||| | ||| |||| || |||| | ||| | |
Sbjct 764540 CTACTCTTCCATAACACCCAGAAGGCAGCGCTATCTGAATGTCCATTTTCA-CAAGAG-C 764597
Query 37643 TTTCTCCA-GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697
|||||||| | | || || ||||| || || || || | || || ||||||||
Sbjct 764598 TTTCTCCATAGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 764653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685745245183680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |