Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq9420 246 2e-60
seq30183 183 2e-41
seq37045 113 4e-20
seq30225 102 6e-17
seq43609 98.7 8e-16
seq43468 86.0 5e-12
>seq9420
Length=356144
Score = 246 bits (272), Expect = 2e-60
Identities = 642/964 (67%), Gaps = 29/964 (3%)
Strand=Plus/Minus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | |||||| | | | |||||| | || || | | || ||||| || ||||
Sbjct 53493 TGCTGAGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGC 53434
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
| ||||| || || || | || || || ||||| || || || || || || | || |
Sbjct 53433 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 53374
Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854
|| || |||| | ||| | | | || ||| | || | | |||||||||| ||| |
Sbjct 53373 ACATTTGGCAC-TGGGAATCCCTGAAGCCCA-AGGAGAGAGATTTTATATCCCATGTTCT 53316
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
|| || ||||| || || || || ||||| |||||||| ||||| || ||| ||
Sbjct 53315 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 53256
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
||||||||| | ||||||| || ||||| | ||| || |||||||||||||| || ||
Sbjct 53255 AGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACAT 53196
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034
||||| |||||||| ||| | || || || || ||||| |||||| | || | | |
Sbjct 53195 ACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 53136
Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094
| | ||||| | ||||| | ||| | || | || ||||| |||||| |
Sbjct 53135 ATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 53076
Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151
| ||||| | | | | | | | ||| ||||| |||| | ||||| | |
Sbjct 53075 GCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGC 53016
Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211
|||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| |
Sbjct 53015 GGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT 52959
Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271
||||||||| | || ||||| ||||| | || || | ||||| || ||||| || ||
Sbjct 52958 GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 52899
Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331
|||||||||| || | | | | || | | || || | | || ||| | | |
Sbjct 52898 TTTTGCTTGCCTGATGTTCAAACACCTGGTACAC--AAACCACTGGAGT-AGAGAGTAAG 52842
Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391
||| || || | | || || ||||||||| ||||| | || || || |||||
Sbjct 52841 AGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGT 52782
Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450
|| || || ||||| || || | | ||||| ||||| ||||| | | |||||
Sbjct 52781 GAAGCCTATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 52723
Query 44451 GTTTAC-TTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTTGATTT 44508
| || | |||||||||||| || || | | | ||| | ||||| ||||| ||
Sbjct 52722 G---ACATGCTGGAACTGGGTT-TGAGCAAGGTTTTCAGAGTAGAGAACCCATTTGACTT 52667
Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATA 44568
|||||| |||||||| || ||| || ||||| ||||| || | || | || ||
Sbjct 52666 TATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAAGGGAGTA 52612
Query 44569 TCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAAGATTT 44625
|||| | ||||| || || || ||| || ||| ||||| ||||| || ||
Sbjct 52611 TCAGAGGATGGGAGTGGTGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCTGACTT 52552
Query 44626 CTAA 44629
||||
Sbjct 52551 CTAA 52548
>seq30183
Length=85853
Score = 183 bits (202), Expect = 2e-41
Identities = 386/568 (68%), Gaps = 12/568 (2%)
Strand=Plus/Minus
Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|||||| || ||| ||| ||| || |||| | ||| || || |||| || | |||||
Sbjct 32000 TCATGATATTTGGAAAACGTATAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAAGT 31941
Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
|| || | || ||| || |||| ||| || | || || | |||| | |||||
Sbjct 31940 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGATATTTT 31883
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900
||||| | || |||| || ||||| || | || |||||||| ||||||| |||||
Sbjct 31882 ATATCCTATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAGTAGATGAAAACTTGGTG 31823
Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959
| ||||| |||||| |||| ||||| |||| | || || |||||||| ||||
Sbjct 31822 GAACAATTTGCTCAAGAAATTCAGATTAC-AGAAACCTTCTGCTTCTATGGGTTCCAAAC 31764
Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||| | |||||| | ||||| || || | | ||| || || || || |||| |||||
Sbjct 31763 TGCTAGAGAAAACACACATTCTGACATAAATAATCTCCTTATTGACAC--ACATTAAAGA 31706
Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079
| | || | | | | || ||||| || |||||| | |||| | | || | ||
Sbjct 31705 TAACAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACAATGCCTGTG-TCAAGAAGAA 31647
Query 44080 AGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGT 44136
|||| |||| | | | ||||| || | | | | | ||||||| | |||
Sbjct 31646 GGCAGTTTGGGTCTTGTATTGGATTGGGAACAAAGACGTTACCCATGGAGAATGTGTTGC 31587
Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196
|||||||| | |||||| ||| | |||||| || || ||||| ||||| ||| |
Sbjct 31586 AGCGTTTGCCCTAGTGGAAAGCACCTGCTTTTCTGGTTCTTTTGCACTGATATTCTGGCT 31527
Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256
||||||||||| |||||||||| | || ||||| ||||| | || || |||||||
Sbjct 31526 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGA 31467
Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| ||||| || | |||||||| ||
Sbjct 31466 GGGTTTACACTGTTACGTTGCTTGCCTG 31439
>seq37045
Length=3135053
Score = 113 bits (124), Expect = 4e-20
Identities = 92/109 (84%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 1581434 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 1581376
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| |||||||| || || || ||||| ||||||
Sbjct 1581375 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 1581327
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| |||| || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 1579357 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 1579298
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 1579297 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 1579238
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 1579237 ATCAGCAGAGATGA 1579224
>seq30225
Length=104041
Score = 102 bits (112), Expect = 6e-17
Identities = 198/290 (68%), Gaps = 2/290 (1%)
Strand=Plus/Plus
Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453
|||| || || | |||||| | | ||| || ||||| | |||||| || || ||||| |
Sbjct 52037 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAGTAAACATAC 52096
Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513
||||||| || | ||||| || |||| || | ||| ||||||| | ||||||
Sbjct 52097 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGCTTTGC 52156
Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573
| ||||| || ||||| || | |||||||||||| |||| ||||| | ||||
Sbjct 52157 AGGCAGCATGAATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAATGCCTACAT 52216
Query 77574 TAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCG-GGCTTGTTTCTGTCCG 77632
| | || || ||||| || |||| || || ||| | ||| | | | | ||
Sbjct 52217 TTAAAGGATGGCCCGGCCCCCAGTAAACGCAGATTCCTGCTTGTGGCCT-TCTACGCCCA 52275
Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682
|| |||| ||||| ||||||||||| || || ||| ||||||||
Sbjct 52276 TTACTGGAGCAGCAGCCATCAGTGTAGACAACAACAAAGTCTCCCATGTA 52325
>seq43609
Length=3422226
Score = 98.7 bits (108), Expect = 8e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
|||||||| |||| || || ||| | || ||||| || || || |||| ||||
Sbjct 1890921 TGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 1890980
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || |||| || ||||| || |||||||| ||||| || || || ||||| || |
Sbjct 1890981 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 1891040
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || || ||||||||||| |||||||| |||
Sbjct 1891041 GCTACGCCCTGCTCACGTACATGATTGCGCAC 1891072
>seq43468
Length=1795776
Score = 86.0 bits (94), Expect = 5e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | |||||||
Sbjct 1428326 GGTTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 1428385
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 1428386 CTTCCTTCTGGACAGCAGAAGAGGT 1428410
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 1453365 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 1453424
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| || ||||||||
Sbjct 1453425 AACGAGTTTCGGAGTATCAGCG 1453446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396799580549560
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