Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9420 246 2e-60 seq30183 183 2e-41 seq37045 113 4e-20 seq30225 102 6e-17 seq43609 98.7 8e-16 seq43468 86.0 5e-12 >seq9420 Length=356144 Score = 246 bits (272), Expect = 2e-60 Identities = 642/964 (67%), Gaps = 29/964 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| | | | |||||| | || || | | || ||||| || |||| Sbjct 53493 TGCTGAGAGAAAACTCCTGGCGCTTTGTCATCTTCCCCACCGAGTACCATGATATCTGGC 53434 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || || | || | Sbjct 53433 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 53374 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | | || ||| | || | | |||||||||| ||| | Sbjct 53373 ACATTTGGCAC-TGGGAATCCCTGAAGCCCA-AGGAGAGAGATTTTATATCCCATGTTCT 53316 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||| ||||| || ||| || Sbjct 53315 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 53256 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || |||||||||||||| || || Sbjct 53255 AGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAGAACAT 53196 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| |||||||| ||| | || || || || ||||| |||||| | || | | | Sbjct 53195 ACATTCTGAAATGTATAGTTTCCTTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 53136 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | ||||| | ||||| | ||| | || | || ||||| |||||| | Sbjct 53135 ATTTCTCCTCAATGCCACTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 53076 Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | ||||| | | | | | | | ||| ||||| |||| | ||||| | | Sbjct 53075 GCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGC 53016 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 |||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| | Sbjct 53015 GGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT 52959 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||||||| | || ||||| ||||| | || || | ||||| || ||||| || || Sbjct 52958 GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 52899 Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331 |||||||||| || | | | | || | | || || | | || ||| | | | Sbjct 52898 TTTTGCTTGCCTGATGTTCAAACACCTGGTACAC--AAACCACTGGAGT-AGAGAGTAAG 52842 Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391 ||| || || | | || || ||||||||| ||||| | || || || ||||| Sbjct 52841 AGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGT 52782 Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 || || || ||||| || || | | ||||| ||||| ||||| | | ||||| Sbjct 52781 GAAGCCTATTGGGATGAATTGCAC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 52723 Query 44451 GTTTAC-TTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTTGATTT 44508 | || | |||||||||||| || || | | | ||| | ||||| ||||| || Sbjct 52722 G---ACATGCTGGAACTGGGTT-TGAGCAAGGTTTTCAGAGTAGAGAACCCATTTGACTT 52667 Query 44509 TATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATA 44568 |||||| |||||||| || ||| || ||||| ||||| || | || | || || Sbjct 52666 TATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAAGGGAGTA 52612 Query 44569 TCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAAGATTT 44625 |||| | ||||| || || || ||| || ||| ||||| ||||| || || Sbjct 52611 TCAGAGGATGGGAGTGGTGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCTGACTT 52552 Query 44626 CTAA 44629 |||| Sbjct 52551 CTAA 52548 >seq30183 Length=85853 Score = 183 bits (202), Expect = 2e-41 Identities = 386/568 (68%), Gaps = 12/568 (2%) Strand=Plus/Minus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||| ||| || |||| | ||| || || |||| || | ||||| Sbjct 32000 TCATGATATTTGGAAAACGTATAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAAGT 31941 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | |||| | ||||| Sbjct 31940 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGATATTTT 31883 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| | || |||| || ||||| || | || |||||||| ||||||| ||||| Sbjct 31882 ATATCCTATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAGTAGATGAAAACTTGGTG 31823 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | ||||| |||||| |||| ||||| |||| | || || |||||||| |||| Sbjct 31822 GAACAATTTGCTCAAGAAATTCAGATTAC-AGAAACCTTCTGCTTCTATGGGTTCCAAAC 31764 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| | |||||| | ||||| || || | | ||| || || || || |||| ||||| Sbjct 31763 TGCTAGAGAAAACACACATTCTGACATAAATAATCTCCTTATTGACAC--ACATTAAAGA 31706 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | || | | | | || ||||| || |||||| | |||| | | || | || Sbjct 31705 TAACAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAACAATGCCTGTG-TCAAGAAGAA 31647 Query 44080 AGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 |||| |||| | | | ||||| || | | | | | ||||||| | ||| Sbjct 31646 GGCAGTTTGGGTCTTGTATTGGATTGGGAACAAAGACGTTACCCATGGAGAATGTGTTGC 31587 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 |||||||| | |||||| ||| | |||||| || || ||||| ||||| ||| | Sbjct 31586 AGCGTTTGCCCTAGTGGAAAGCACCTGCTTTTCTGGTTCTTTTGCACTGATATTCTGGCT 31527 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| |||||||||| | || ||||| ||||| | || || ||||||| Sbjct 31526 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGA 31467 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||||| || | |||||||| || Sbjct 31466 GGGTTTACACTGTTACGTTGCTTGCCTG 31439 >seq37045 Length=3135053 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 1581434 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 1581376 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 1581375 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 1581327 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 1579357 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 1579298 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 1579297 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 1579238 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 1579237 ATCAGCAGAGATGA 1579224 >seq30225 Length=104041 Score = 102 bits (112), Expect = 6e-17 Identities = 198/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | | ||| || ||||| | |||||| || || ||||| | Sbjct 52037 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAGTAAACATAC 52096 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || |||| || | ||| ||||||| | |||||| Sbjct 52097 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGCTTTGC 52156 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573 | ||||| || ||||| || | |||||||||||| |||| ||||| | |||| Sbjct 52157 AGGCAGCATGAATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAATGCCTACAT 52216 Query 77574 TAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCG-GGCTTGTTTCTGTCCG 77632 | | || || ||||| || |||| || || ||| | ||| | | | | || Sbjct 52217 TTAAAGGATGGCCCGGCCCCCAGTAAACGCAGATTCCTGCTTGTGGCCT-TCTACGCCCA 52275 Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 || |||| ||||| ||||||||||| || || ||| |||||||| Sbjct 52276 TTACTGGAGCAGCAGCCATCAGTGTAGACAACAACAAAGTCTCCCATGTA 52325 >seq43609 Length=3422226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 1890921 TGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 1890980 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 1890981 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 1891040 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 1891041 GCTACGCCCTGCTCACGTACATGATTGCGCAC 1891072 >seq43468 Length=1795776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | ||||||| Sbjct 1428326 GGTTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 1428385 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 1428386 CTTCCTTCTGGACAGCAGAAGAGGT 1428410 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 1453365 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 1453424 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 1453425 AACGAGTTTCGGAGTATCAGCG 1453446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396799580549560