Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq69637 89.7 4e-13
seq44178 82.4 6e-11
seq42510 82.4 6e-11
seq39797 82.4 6e-11
seq36884 82.4 6e-11
seq33539 82.4 6e-11
>seq69637
Length=240
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144
|||| | ||||| ||||| ||||||||| | || |||||||| || || || || | |
Sbjct 232 TGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATTC 173
Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204
| ||||| || ||| ||| |||| |||| | ||||||| | ||| || || |
Sbjct 172 CTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGGTTCGACCTCAA 113
Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| || || | || || ||||| || || |||||||||||||||
Sbjct 112 GTGTGATGGTCTTACCAGTCAGGGTCTTGACAAAGATTTGCATA 69
>seq44178
Length=3241816
Score = 82.4 bits (90), Expect = 6e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144
|||| | ||||| |||||||| ||||| | || |||||||| || || || || | ||
Sbjct 924548 TGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATAC 924607
Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204
|||| || || || ||| ||| | | || | ||||| ||| || || || |
Sbjct 924608 CCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAA 924667
Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || || | ||||||||| || || ||||||||||| |||||
Sbjct 924668 GGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 924710
>seq42510
Length=1301382
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | ||||| || ||||||||||||||||| || | || | ||
Sbjct 87139 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87198
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| || || || || || | || || | || ||||| || || | || || |||||
Sbjct 87199 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 87258
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| || || | || |||||| || || || || |
Sbjct 87259 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87318
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || |||||||| || || |||||
Sbjct 87319 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 87351
>seq39797
Length=2305578
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | ||||| || ||||||||||||||||| || | || | ||
Sbjct 1757138 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1757079
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| || || || || || | || || | || ||||| || || | || || |||||
Sbjct 1757078 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1757019
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| || || | || |||||| || || || || |
Sbjct 1757018 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 1756959
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || |||||||| || || |||||
Sbjct 1756958 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1756926
>seq36884
Length=899181
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || ||||| | ||||| |||||||||||||||||||| || | || | ||
Sbjct 628426 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 628485
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| || || || || || | || || | ||| ||| | || || | || || ||| |
Sbjct 628486 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAAC 628545
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| | | |||||| ||||||| || |||||| || || || || |
Sbjct 628546 CTGGATCTTGGCCTATACATTTTCTATTGTGTCTGAGGGTTCAACCTCGAGGGTGATGGT 628605
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || ||| |||| || || |||||
Sbjct 628606 CTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 628638
>seq33539
Length=658333
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094
||| || | ||| | ||||| || ||||||||||||||||| || | || | ||
Sbjct 236610 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 236669
Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154
||| || || || || || | || || | || ||||| || || | || || |||||
Sbjct 236670 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 236729
Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214
||||||| || | |||||| || |||| || |||||| || || || || |
Sbjct 236730 CTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACCTCGAGGGTGATGGT 236789
Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || |||||||| || || |||||
Sbjct 236790 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 236822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424232598529344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |