Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq44290 100 3e-16
seq42380 95.1 1e-14
seq37045 86.0 7e-12
>seq44290
Length=2199897
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 1025206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1025265
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| ||||||||||| |||||||| || |||
Sbjct 1025266 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 1025325
Query 117425 ATCGT 117429
|| ||
Sbjct 1025326 ATAGT 1025330
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 1025206 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1025265
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | |||||| ||||| || ||||||||||||||||||
Sbjct 1025266 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 1025325
Query 152149 ATCGT 152153
|| ||
Sbjct 1025326 ATAGT 1025330
>seq42380
Length=1694362
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||| | || ||||||||
Sbjct 1145314 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 1145373
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | |
Sbjct 1145374 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1145433
Query 152149 ATCGT 152153
|| ||
Sbjct 1145434 ATGGT 1145438
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| || | || || | ||||||||||||| || | ||||| || ||
Sbjct 1145314 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 1145373
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 1145374 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 1145433
Query 117425 ATCGT 117429
|| ||
Sbjct 1145434 ATGGT 1145438
>seq37045
Length=3135053
Score = 86.0 bits (94), Expect = 7e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||||||||| ||||| || |||||
Sbjct 1579224 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1579283
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || || | || ||||| |||||||||||||| || ||||||||
Sbjct 1579284 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1579343
Query 74892 ACAAGGCGTT 74901
|||| ||||
Sbjct 1579344 ACAACACGTT 1579353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546289070817600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |