Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq42383 86.0 8e-12 seq38390 82.4 9e-11 >seq42383 Length=594172 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 32676 TGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATAATGAGA 32735 |||| || ||| | |||||||| | || ||| | || || | || || || ||||| Sbjct 25285 TGGTGGTACTTTGTTTCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATTCTGAGA 25226 Query 32736 AAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTTACTTTA 32795 |||||| ||||||||| || | || || || || || | ||| |||||||| || Sbjct 25225 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTGTATCATCACTGTACGATGTTTACCTTG 25166 Query 32796 GGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 | ||||| || ||||| ||| ||||||||||||| Sbjct 25165 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 25131 >seq38390 Length=1205360 Score = 82.4 bits (90), Expect = 9e-11 Identities = 141/203 (69%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 22635 ACTTCTCTTATTTCTGGATGCGCTATT---TTTTCAAATATAAGTTGTGCTACTCTATCG 22691 |||||| ||||||||||| | | ||| ||| || || ||||| || ||| Sbjct 764352 ACTTCTTCTATTTCTGGATAAAAAAATCCGTTTGCAA--ATGAGCTGTGCAGTTCAATCA 764409 Query 22692 CCCTTATTTACGTAAAATACATCCTTACTAAAATTAAATAACAATATACCTATATTTCCC 22751 ||||| || || | ||| || || | ||| ||||| | | ||||| | |||||| Sbjct 764410 CCCTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAATACCAACATTTCCT 764469 Query 22752 CTGTAATCTCTATCTATCACACCCGCGCCTACATCGATAAAATGATTACATGCCAATCCC 22811 || |||||| | |||| ||||| || |||||||| ||||| || || ||||| || Sbjct 764470 CTATAATCTTCACCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCT 764529 Query 22812 GATCTAGGAGATATTCTTCCATA 22834 || | |||| || ||||||||| Sbjct 764530 GACCGTGGAGCTACTCTTCCATA 764552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602159072042880