Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10-
28] 135,512 sequences; 2,899,552,139 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq43609 134 1e-26
seq36948 109 4e-19
seq30207 109 4e-19
seq7505 109 4e-19
seq44127 100 2e-16
seq23601 93.3 3e-14
>seq43609
Length=3422226
Score = 134 bits (148), Expect = 1e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||
Sbjct 1891083 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 1891024
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| ||||| |||||||| ||||| || || ||||| | || |
Sbjct 1891023 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 1890964
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | ||| ||||| ||||| || ||||| ||
Sbjct 1890963 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 1890920
Score = 123 bits (136), Expect = 2e-23
Identities = 128/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| ||||| || ||||||||||||||||| || || || || |||| |||
Sbjct 1886926 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 1886867
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| ||
Sbjct 1886866 CCCTTCTTCTCTGGCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 1886807
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
|||||| || || ||||| ||| |||||||| | |||||||| ||
Sbjct 1886806 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 1886759
>seq36948
Length=1024264
Score = 109 bits (120), Expect = 4e-19
Identities = 179/251 (71%), Gaps = 13/251 (5%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCC--CTGCTGAGGACTACGTTTATCCTGTCT 110436
||||||||| || || || || || || |||||||| |||| || || || |
Sbjct 536917 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTTTCTGCTGAGAACTAAATTAATTCTACCC 536976
Query 110437 CTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACG 110496
| | ||||| |||||| || || ||||||||||||||||| ||||||| |||||||
Sbjct 536977 TTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGA 537036
Query 110497 TTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTT 110555
||||| || ||| |||||||| || | |||| | ||| | || | | | || || ||
Sbjct 537037 TTCTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT 537095
Query 110556 GCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGA 110613
| || || |||| ||||| || ||||| || |||||||||||| ||| |||
Sbjct 537096 CCTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGGGA 537149
Query 110614 CAC-GCGGCCA 110623
||| ||| |||
Sbjct 537150 CACAGCGACCA 537160
>seq30207
Length=2109381
Score = 109 bits (120), Expect = 4e-19
Identities = 183/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| ||||| || || || || |||||||| |||| || || || | |
Sbjct 658283 ATGAGCTCCTTGTGGGGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 658342
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || | ||||||||||||||||| ||| ||| ||||||| ||
Sbjct 658343 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 658402
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA-AGGCTCGAAAGTGTTTAAAATCTTTGC 110557
||| || ||| |||||||| || | ||||| || |||| | | | || || || |
Sbjct 658403 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCACTGGAAA-TATCTGAATTCATTCC 658461
Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616
|| || |||| ||||| || ||||| || | |||||||||| ||||| ||
Sbjct 658462 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCTGATGCCCATGTTCTGG-GAC 658514
Query 110617 GCGGCCACGATACCGTTCAG 110636
| || ||||| | ||| ||
Sbjct 658515 ACAGCGACGATGCAGTTTAG 658534
>seq7505
Length=927043
Score = 109 bits (120), Expect = 4e-19
Identities = 183/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || | |||||||| |||| || || || | |
Sbjct 647928 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 647987
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || | ||||||||||||||||| || |||| ||||||| ||
Sbjct 647988 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTATCCATAATCACCAGATT 648047
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 110557
||| || ||| |||||||| || | |||| | ||| | || | | | || || || |
Sbjct 648048 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATTCC 648106
Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616
|| ||| |||| ||||| || ||||| || |||||||||||| ||||| ||
Sbjct 648107 TGAG------AGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 648159
Query 110617 GCGGCCACGATACCGTTCAG 110636
| || ||||| | ||| ||
Sbjct 648160 ACAGCGACGATGCAGTTTAG 648179
>seq44127
Length=2713167
Score = 100 bits (110), Expect = 2e-16
Identities = 179/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || |||||||| |||| || || || || |
Sbjct 202103 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 202162
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| ||
Sbjct 202163 GAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGATT 202222
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557
||| || ||| |||||||| | | |||| ||| | || | | || || || |
Sbjct 202223 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-CTTCTCTGGAAATACCTGAATTCATTCC 202281
Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617
|| ||| |||| ||||| || || || || || |||||||||| | | ||
Sbjct 202282 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCAATGCCCATGTTTTGGGACA 202335
Query 110618 CGGCCACGATACCGTTCAG 110636
| || ||||| | ||| ||
Sbjct 202336 CAGCGACGATGCAGTTTAG 202354
>seq23601
Length=1137639
Score = 93.3 bits (102), Expect = 3e-14
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291
||| ||||| || |||| |||||||||||| || | || || |||| | | || |||||
Sbjct 135459 GTATTCTGC-CCAAAATACCTCCACTGGAAGCCATCAACTGGGCCCAAGCCCCCTTCTTC 135401
Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351
| ||| ||| ||| ||||||||||||||| || || ||| | || || || |
Sbjct 135400 TCAGTGGA-GAATCCCAAGTTGTCCAAAAAGTCTTGGGCTCCATTGACATCTCACATTCT 135342
Query 30352 TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30411
|| ||||| ||| || ||||| | | |||||| || ||| |||||||||| ||
Sbjct 135341 CACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACCACAGCAAGTC 135282
Query 30412 CTCCA 30416
|||||
Sbjct 135281 CTCCA 135277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405639357043104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |