Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinopithecus_20roxellana_20[refseq_20GCF_5F000769185.1_202014-10- 28] 135,512 sequences; 2,899,552,139 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq44056 127 1e-24 seq41127 105 4e-18 seq112392 104 1e-17 seq45083 104 1e-17 seq44178 102 5e-17 seq38975 102 5e-17 seq21918 98.7 6e-16 seq52973 96.9 2e-15 seq37440 82.4 5e-11 >seq44056 Length=626226 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||||||||| || || ||| ||| || || ||||| || ||||| Sbjct 244786 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 244845 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || ||||| ||||||||||| | |||||| ||||| || || Sbjct 244846 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 244905 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| ||| | ||| ||||| | ||| | Sbjct 244906 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGA 244964 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || ||||| || || || || ||||| ||||||||||| Sbjct 244965 CCTCAAGGGTGATGGTTTTGCCCGTGTGGGTCTTTACAAAGATCTGCATGTT 245016 >seq41127 Length=7874669 Score = 105 bits (116), Expect = 4e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||||||||| || || ||| ||| || || ||||| || ||||| || || || Sbjct 7357811 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGG 7357870 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || |||||||| | | ||| ||||| || || | |||||| Sbjct 7357871 CCATCTTCCAGCTGTTTGCCAGCAAATATCAGATGCTACTGGTCAGGTGGGATACCCTCC 7357930 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||| | ||| |||| | ||| | | ||| ||||| | ||| || || | || Sbjct 7357931 TTGTGT-TGAACTTTGGCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGG 7357989 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || ||||| || || | || |||||||| ||||||||||| Sbjct 7357990 GATGGTTTTGCCTGTGAGGGTCTTCACAAAGATCTGCATGTT 7358031 >seq112392 Length=498 Score = 104 bits (114), Expect = 1e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| ||||| ||||| || | | || || | || || || ||| Sbjct 145 TGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCCAAAGTACGGCCATCCTCCAGCTGT 204 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || || ||||||||||| || || | ||||||||||| ||| || Sbjct 205 TTTCCAGCAAAGATCAACCGCTGTTGGTCAGGGGGGATCCCCTCCTTGTC-CTGAATCTT 263 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || ||| || || ||| || || ||||| || |||| ||| || || || || || Sbjct 264 TGCTTTCACATTATCAATGGTATCCGAACTCTCAACCTCCAGGGTGATGGTCTTCCCAGT 323 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 || || || |||||||||||||| Sbjct 324 CAAGGTCTTAACAAAAATCTGCAT 347 >seq45083 Length=200 Score = 104 bits (114), Expect = 1e-17 Identities = 111/145 (77%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || || | |||||| | || | ||||||||| ||||||||| ||||| ||||| | Sbjct 186 CCACCACGAAGACGGAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCACTC 127 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || ||| || | || |||||||| || ||||| || || |||||||||||||| || | Sbjct 126 AAGGTG--CGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGCTGTTGGTCGGGTG 69 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | ||||||||||||| |||||| Sbjct 68 GGATTCCCTCCTTGTCTTGGATCTT 44 >seq44178 Length=3241816 Score = 102 bits (112), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 34531 TAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGG 34590 || ||||| || || || | ||||| || ||||| ||||||||||| | |||||| ||| Sbjct 924535 TAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGG 924594 Query 34591 TCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTC 34649 || || || | |||||||||||| ||| ||| | ||| || | ||| ||||| Sbjct 924595 TCAGGTGGGATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACT 924653 Query 34650 GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||| || || | ||| || ||||| || || | || |||||||| ||||||||||| Sbjct 924654 GGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 924713 >seq38975 Length=485 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || | || |||||||||||||| ||||| ||| Sbjct 373 CCACCACGAAGACGGAGCACCAAGTGCAATGTCGATTCCTTTTGAATGTTGTAATCCGAA 314 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| || | || || || ||||| || || || |||||||| || || Sbjct 313 AGGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAATCGTTGTTGGTCGGGTGGG 254 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| |||| || | |||||| || ||| || ||| || || Sbjct 253 ATACCCTCCTTATCTTGGATC-TTCGCCTTAACGTTATCAATAGTATCTGATGATTCTAC 195 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || || || || || ||||||||||| Sbjct 194 TTCTAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 147 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || |||||||||||||| ||||| || || || || Sbjct 136 AGACGAAGGACCAAATGTAATGTTGATTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGG 77 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| ||||| ||||| || | ||| ||||| || || || | |||||| Sbjct 76 CCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCCTCC 17 Query 34609 TTGTCTGTGATCTT 34622 |||||| ||||| Sbjct 16 TTGTCTTGAATCTT 3 >seq21918 Length=9848887 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || ||| ||| || || ||||| || || || Sbjct 7768437 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 7768496 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || || ||||| || || | ||| ||||| || || Sbjct 7768497 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 7768556 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| |||| || || | ||| ||||| | ||| || Sbjct 7768557 ATGCCCTCCTTGTCTTGGATC-TTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 7768615 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 7768616 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 7768663 >seq52973 Length=211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34490 GACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCT 34549 |||||||||| | || || ||| || |||||||||||||| || | ||| ||||| Sbjct 211 GACGCAACACAAGGTGAAGGGTGGATTCTTTTTGAATGTTATAGTCAGCAAGCGTTCGTC 152 Query 34550 CGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCT 34609 | || || || || ||||| ||||| || || | ||| ||||| || || | ||||||| Sbjct 151 CATCCTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTGGGATACCCTCCT 92 Query 34610 TGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 | ||| |||| || | || || | ||| ||||| ||||||||| |||| ||| Sbjct 91 TATCTTGGATC-TTAGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTA 33 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAAT 34700 || || || || || | || || || || || Sbjct 32 ATAGTCTTTCCTGTGAGGGTCTTGACGAATAT 1 >seq37440 Length=3232823 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||||| ||||| || || ||| ||| | || ||||| || ||||| Sbjct 1723547 GCCACCTCACAGACGCAGCACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTGA 1723488 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || | | | || || | ||||| || |||||||| | || ||| ||||| ||| | Sbjct 1723487 GAGACTGCAGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAG 1723428 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | ||| || | | | ||||| | ||||| Sbjct 1723427 GATGCCCTCCTTGTCTTGGAT-TTCGGCTTTGACATTCTCAGTGGTGTCAGTGGCCTCCA 1723369 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || | | || |||||||| |||||||| Sbjct 1723368 CCTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 1723320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314209807542296